Evidence map›Paper›PMID 23612966›Full record

ArticleThe Journal of biological chemistry2013

Vps9 family protein Muk1 is the second Rab5 guanosine nucleotide exchange factor in budding yeast.

Andrew L Paulsel, Alexey J Merz, Daniel P Nickerson

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 41 citations in OpenAlex.

  1. Endocytosis and trans-Golgi Network in Yeast.Sub-cellular biochemistry · 2026
    Review
  2. Article
  3. Endocytic tethers modulate unconventional GAPDH secretion.Cell surface (Amsterdam, Netherlands) · 2025
    Article
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  11. Control of vacuole membrane homeostasis by a resident PI-3,5-kinase inhibitor.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
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  20. A Vps21 endocytic module regulates autophagy.Molecular biology of the cell · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Andrew L PaulselDepartment of Biochemistry, University of Washington, Seattle, Washington 98195-7350, USA.
Alexey J Merz
Daniel P Nickerson
University of Washington · US

Funding

Dynamics of Endomembrane Docking and FusionR01GM077349 · NIGMS · UNIVERSITY OF WASHINGTON · PI MERZ, ALEXEY JARRELL · 2006 to 2024
$6.1M
NIGMS NIH HHS GM077349NIGMS NIH HHS R01 GM077349NIGMS NIH HHS T32 GM09270
6 · The paper itself

Abstract

VPS9 domains can act as guanosine nucleotide exchange factors (GEFs) against small G proteins of the Rab5 family. Saccharomyces cerevisiae vps9Δ mutants have trafficking defects considerably less severe than multiple deletions of the three cognate Rab5 paralogs (Vps21, Ypt52, and Ypt53). Here, we show that Muk1, which also contains a VPS9 domain, acts as a second GEF against Vps21, Ypt52, and Ypt53. Muk1 is partially redundant with Vps9 in vivo, with vps9Δ muk1Δ double mutant cells displaying hypersensitivity to temperature and ionic stress, as well as profound impairments in endocytic and Golgi endosome trafficking, including defects in sorting through the multivesicular body. Cells lacking both Vps9 and Muk1 closely phenocopy double and triple knock-out strains lacking Rab5 paralogs. Microscopy and overexpression experiments demonstrate that Vps9 and Muk1 have distinct localization determinants. These experiments establish Muk1 as the second Rab5 GEF in budding yeast.

Indexed as

EndocytosisEndosomesGolgi ApparatusGreen Fluorescent ProteinsGuanine Nucleotide Exchange FactorsMicroscopy, FluorescenceMultivesicular BodiesMutationProtein Transportrab5 GTP-Binding Proteinsrab GTP-Binding ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsVacuolesVesicular Transport ProteinsGreen Fluorescent ProteinsGuanine Nucleotide Exchange FactorsMuk1 protein, S cerevisiaerab5 GTP-Binding Proteinsrab GTP-Binding ProteinsSaccharomyces cerevisiae ProteinsVesicular Transport ProteinsVPS21 protein, S cerevisiaeVPS9 protein, S cerevisiaeYPT52 protein, S cerevisiaeYPT53 protein, S cerevisiaeEndocytosisG ProteinsGuanine Nucleotide Exchange Factor (GEF)Luciferase Reporter of Intraluminal Deposition (LUCID)Membrane FusionMVBRabVps21Ypt52Ypt53

Identifiers

PMID23612966
PMCPMC3689959
OpenAlexW2122997911

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.