Evidence map›Paper›PMID 23612295›Full record

ArticleNature communications2013

Max is a repressor of germ cell-related gene expression in mouse embryonic stem cells.

Ikuma Maeda, Daiji Okamura, Yuko Tokitake, Makiko Ikeda, Hiroko Kawaguchi, Nathan Mise, Kuniya Abe, Toshiaki Noce, Akihiko Okuda, Yasuhisa Matsui

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Nature communications, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
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  9. Article
  10. Review
  11. Epigenomes · 2022
    Review
  12. Article
  13. Review
  14. Article
  15. Contribution ofFrontiers in cell and developmental biology · 2022
    Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Ikuma MaedaCell Resource Center for Biomedical Research, Institute of Development, Aging and Cancer, Tohoku University, Sendai, Miyagi 980-8575, Japan.
Daiji Okamura
Yuko Tokitake
Makiko Ikeda
Hiroko Kawaguchi
Nathan Mise
Kuniya Abe
Toshiaki Noce
Akihiko Okuda
Yasuhisa Matsui
Tohoku University · JPSalk Institute for Biological Studies · USKeio University · JPRIKEN BioResource Research Center · JPSaitama Medical University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Embryonic stem cells and primordial germ cells (PGCs) express many pluripotency-associated genes, but embryonic stem cells do not normally undergo conversion into primordial germ cells. Thus, we predicted that there is a mechanism that represses primordial germ cell-related gene expression in embryonic stem cells. Here we identify genes involved in this putative mechanism, by using an embryonic stem cell line with a Vasa reporter in an RNA interference screen of transcription factor genes expressed in embryonic stem cells. We identify five genes that result in the expression of Vasa when silenced. Of these, Max is the most striking. Transcriptome analysis reveals that Max knockdown in embryonic stem cells results in selective, global derepression of germ cell-specific genes. Max interacts with histone H3K9 methyltransferases and associates with the germ cell-specific genes in embryonic stem cells. In addition, Max knockdown results in a decrease in histone H3K9 dimethylation at their promoter regions. We propose that Max is part of protein complex that acts as a repressor of germ cell-related genes in embryonic stem cells.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsBiomarkersCell LineDEAD-box RNA HelicasesEmbryonic Stem CellsFlow CytometryGene Knockdown TechniquesGenes, ReporterGerm CellsHistone-Lysine N-MethyltransferaseHistone MethyltransferasesHistonesLysineMeiosisBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsBiomarkersDdx4 protein, mouseDEAD-box RNA HelicasesHistone-Lysine N-MethyltransferaseHistone MethyltransferasesHistonesLysineMax protein, mouseRepressor Proteins

Identifiers

PMID23612295
OpenAlexW2063687663

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.