Evidence map›Paper›PMID 23609930›Full record

ArticleProteins2013

Crystal structure of human cytosolic aspartyl-tRNA synthetase, a component of multi-tRNA synthetase complex.

Kyung Rok Kim, Sang Ho Park, Hyoun Sook Kim, Kyung Hee Rhee, Byung-Gyu Kim, Dae Gyu Kim, Mi Seul Park, Hyun-Jung Kim, Sunghoon Kim, Byung Woo Han

Open access · hybridAbstract read
In one paragraph

Article in Proteins, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
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  10. A HypomorphicFrontiers in cellular neuroscience · 2020
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  11. The Leukodystrophies HBSL and LBSL-Correlates and Distinctions.Frontiers in cellular neuroscience · 2020
    Review
  12. Article
  13. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Kyung Rok KimResearch Institute of Pharmaceutical Sciences, Department of Pharmacy, College of Pharmacy, Seoul National University, Seoul, 151-742, Korea.
Sang Ho Park
Hyoun Sook Kim
Kyung Hee Rhee
Byung-Gyu Kim
Dae Gyu Kim
Mi Seul Park
Hyun-Jung Kim
Sunghoon Kim
Byung Woo Han
Seoul National University · KRBiocon (Switzerland) · CHUniversity of Montana · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human cytosolic aspartyl-tRNA synthetase (DRS) catalyzes the attachment of the amino acid aspartic acid to its cognate tRNA and it is a component of the multi-tRNA synthetase complex (MSC) which has been known to be involved in unexpected signaling pathways. Here, we report the crystal structure of DRS at a resolution of 2.25 Å. DRS is a homodimer with a dimer interface of 3750.5 Å(2) which comprises 16.6% of the monomeric surface area. Our structure reveals the C-terminal end of the N-helix which is considered as a unique addition in DRS, and its conformation further supports the switching model of the N-helix for the transfer of tRNA(Asp) to elongation factor 1α. From our analyses of the crystal structure and post-translational modification of DRS, we suggest that the phosphorylation of Ser146 provokes the separation of DRS from the MSC and provides the binding site for an interaction partner with unforeseen functions.

Indexed as

Amino Acid SequenceAspartate-tRNA LigaseCrystallizationEscherichia coliHEK293 CellsHumansModels, MolecularMolecular Sequence DataProtein Processing, Post-TranslationalRecombinant ProteinsSequence AlignmentAspartate-tRNA LigaseRecombinant Proteinsaspartyl-tRNA synthetasecrystal structuremulti-tRNA synthetase complexN-helix

Identifiers

PMID23609930
PMCPMC3824080
OpenAlexW1511041944

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.