Evidence map›Paper›PMID 23609538›Full record

ArticleNucleic acids research2013

Insulator protein Su(Hw) recruits SAGA and Brahma complexes and constitutes part of Origin Recognition Complex-binding sites in the Drosophila genome.

Nadezhda E Vorobyeva, Marina U Mazina, Anton K Golovnin, Daria V Kopytova, Dmitriy Y Gurskiy, Elena N Nabirochkina, Sofia G Georgieva, Pavel G Georgiev, Aleksey N Krasnov

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 69 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Nadezhda E VorobyevaDepartment of Transcriptional Regulation and Chromatin Dynamics, Institute of Gene Biology, Russian Academy of Sciences, Moscow, 119334, Russia.
Marina U Mazina
Anton K Golovnin
Daria V Kopytova
Dmitriy Y Gurskiy
Elena N Nabirochkina
Sofia G Georgieva
Pavel G Georgiev
Aleksey N Krasnov
Engelhardt Institute of Molecular Biology · RUInstitute of Gene Biology · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite increasing data on the properties of replication origins, molecular mechanisms underlying origin recognition complex (ORC) positioning in the genome are still poorly understood. The Su(Hw) protein accounts for the activity of best-studied Drosophila insulators. Here, we show that Su(Hw) recruits the histone acetyltransferase complex SAGA and chromatin remodeler Brahma to Su(Hw)-dependent insulators, which gives rise to regions with low nucleosome density and creates conditions for ORC binding. Depletion in Su(Hw) leads to a dramatic drop in the levels of SAGA, Brahma and ORC subunits and a significant increase in nucleosome density on Su(Hw)-dependent insulators, whereas artificial Su(Hw) recruitment itself is sufficient for subsequent SAGA, Brahma and ORC binding. In contrast to the majority of replication origins that associate with promoters of active genes, Su(Hw)-binding sites constitute a small proportion (6%) of ORC-binding sites that are localized preferentially in transcriptionally inactive chromatin regions termed BLACK and BLUE chromatin. We suggest that the key determinants of ORC positioning in the genome are DNA-binding proteins that constitute different DNA regulatory elements, including insulators, promoters and enhancers. Su(Hw) is the first example of such a protein.

Indexed as

AnimalsBinding SitesCell Cycle ProteinsCell LineChromatin Assembly and DisassemblyDrosophilaDrosophila ProteinsGenome, InsectHigh Mobility Group ProteinsHistone AcetyltransferasesInsulator ElementsNucleosomesOrigin Recognition ComplexRepressor ProteinsTrans-ActivatorsBAP111 protein, Drosophilabrm protein, DrosophilaCdc45 protein, DrosophilaCell Cycle ProteinsDrosophila ProteinsHigh Mobility Group ProteinsHistone AcetyltransferasesNucleosomesOrigin Recognition ComplexRepressor Proteinssu(Hw) protein, DrosophilaTrans-Activators

Identifiers

PMID23609538
PMCPMC3675495
OpenAlexW2050758143

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.