Evidence map›Paper›PMID 23609449›Full record

ArticleThe Journal of biological chemistry2013

Structure of the lectin mannose 6-phosphate receptor homology (MRH) domain of glucosidase II, an enzyme that regulates glycoprotein folding quality control in the endoplasmic reticulum.

Linda J Olson, Ramiro Orsi, Solana G Alculumbre, Francis C Peterson, Ivan D Stigliano, Armando J Parodi, Cecilia D'Alessio, Nancy M Dahms

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 24 citations in OpenAlex.

  1. Structures of the mannose-6-phosphate pathway enzyme, GlcNAc-1-phosphotransferase.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  2. GANAB andInternational journal of molecular sciences · 2022
    Review
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  10. Structures of mammalian ER α-glucosidase II capture the binding modes of broad-spectrum iminosugar antivirals.Proceedings of the National Academy of Sciences of the United States of America · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Linda J OlsonDepartment of Biochemistry, Medical College of Wisconsin, Milwaukee, Wisconsin 53226.
Ramiro OrsiFundación Instituto Leloir and Instituto de Investigaciones Bioquímicas de Buenos Aires, Consejo Nacional de Investigaciones Científicas y Técnicas, C1405BWE Buenos Aires, Argentina.
Solana G AlculumbreFundación Instituto Leloir and Instituto de Investigaciones Bioquímicas de Buenos Aires, Consejo Nacional de Investigaciones Científicas y Técnicas, C1405BWE Buenos Aires, Argentina.
Francis C PetersonDepartment of Biochemistry, Medical College of Wisconsin, Milwaukee, Wisconsin 53226.
Ivan D StiglianoFundación Instituto Leloir and Instituto de Investigaciones Bioquímicas de Buenos Aires, Consejo Nacional de Investigaciones Científicas y Técnicas, C1405BWE Buenos Aires, Argentina.
Armando J ParodiFundación Instituto Leloir and Instituto de Investigaciones Bioquímicas de Buenos Aires, Consejo Nacional de Investigaciones Científicas y Técnicas, C1405BWE Buenos Aires, Argentina.
Cecilia D'AlessioFundación Instituto Leloir and Instituto de Investigaciones Bioquímicas de Buenos Aires, Consejo Nacional de Investigaciones Científicas y Técnicas, C1405BWE Buenos Aires, Argentina; School of Sciences, University of Buenos Aires, C1428EHA Buenos Aires, Argentina. Electronic address: cdalessio@leloir.org.ar.
Nancy M DahmsDepartment of Biochemistry, Medical College of Wisconsin, Milwaukee, Wisconsin 53226. Electronic address: ndahms@mcw.edu.
Fundación Instituto Leloir · ARMedical College of Wisconsin · USConsejo Nacional de Investigaciones Científicas y Técnicas · AR

Funding

STRUCTURAL ANALYSIS OF THE MANNOSE 6-PHOSPHATE RECEPTORSR01DK042667 · NIDDK · MEDICAL COLLEGE OF WISCONSIN · PI DAHMS, NANCY M. · 1997 to 2023
$9.8M
TRANSIENT GLUCOSYLATION OF GYLCOPROTEINSR01GM044500 · NIGMS · LELOIR INSTITUTE · PI PARODI, ARMANDO JOSE · 1990 to 2011
$840k
Howard Hughes Medical InstituteNIDDK NIH HHS R01 DK042667NIDDK NIH HHS R01DK042667NIGMS NIH HHS GM44500NIGMS NIH HHS R01 GM044500
6 · The paper itself

Abstract

Here we report for the first time the three-dimensional structure of a mannose 6-phosphate receptor homology (MRH) domain present in a protein with enzymatic activity, glucosidase II (GII). GII is involved in glycoprotein folding in the endoplasmic reticulum. GII removes the two innermost glucose residues from the Glc3Man9GlcNAc2 transferred to nascent proteins and the glucose added by UDP-Glc:glycoprotein glucosyltransferase. GII is composed of a catalytic GIIα subunit and a regulatory GIIβ subunit. GIIβ participates in the endoplasmic reticulum localization of GIIα and mediates in vivo enhancement of N-glycan trimming by GII through its C-terminal MRH domain. We determined the structure of a functional GIIβ MRH domain by NMR spectroscopy. It adopts a β-barrel fold similar to that of other MRH domains, but its binding pocket is the most shallow known to date as it accommodates a single mannose residue. In addition, we identified a conserved residue outside the binding pocket (Trp-409) present in GIIβ but not in other MRHs that influences GII glucose trimming activity.

Indexed as

alpha-GlucosidasesEndoplasmic ReticulumGlycoproteinsProtein FoldingSchizosaccharomyces pombe ProteinsCrystallography, X-RayMannoseProtein Structure, SecondaryProtein Structure, TertiarySchizosaccharomyces4-nitrophenyl-alpha-glucosidasealpha-GlucosidasesGlycoproteinsMannoseSchizosaccharomyces pombe ProteinsEndoplasmic Reticulum (ER)Glucosidase II βGlycobiologyGlycoproteinMRH DomainN-GlycanNMRStructural Biology

Identifiers

PMID23609449
PMCPMC3675582
OpenAlexW1999258615

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.