Evidence map›Paper›PMID 23609445›Full record

ArticleThe Journal of biological chemistry2013

YidC occupies the lateral gate of the SecYEG translocon and is sequentially displaced by a nascent membrane protein.

Ilie Sachelaru, Narcis Adrian Petriman, Renuka Kudva, Patrick Kuhn, Thomas Welte, Bettina Knapp, Friedel Drepper, Bettina Warscheid, Hans-Georg Koch

Erratum issuedAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. The versatile role of YidC in membrane protein biosynthesis and quality control.Biochimica et biophysica acta. Molecular cell research · 2025
    Review
  5. Article
  6. YidC fromBiomolecules · 2023
    Article
  7. Article
  8. Article
  9. The mechanisms of integral membrane protein biogenesis.Nature reviews. Molecular cell biology · 2022
    Review
  10. Cotranslational Biogenesis of Membrane Proteins in Bacteria.Frontiers in molecular biosciences · 2022
    Review
  11. Lateral gate dynamics of the bacterial translocon during cotranslational membrane protein insertion.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Ilie SachelaruInstitut für Biochemie und Molekularbiologie, ZBMZ, 79104 Freiburg, Germany; Fakultät für Biologie, 79104 Freiburg, Germany.
Narcis Adrian PetrimanInstitut für Biochemie und Molekularbiologie, ZBMZ, 79104 Freiburg, Germany; Fakultät für Biologie, 79104 Freiburg, Germany.
Renuka KudvaInstitut für Biochemie und Molekularbiologie, ZBMZ, 79104 Freiburg, Germany; Fakultät für Biologie, 79104 Freiburg, Germany; Spemann Graduate School of Biology and Medicine (SGBM), 79104 Freiburg, Germany.
Patrick KuhnInstitut für Biochemie und Molekularbiologie, ZBMZ, 79104 Freiburg, Germany; Fakultät für Biologie, 79104 Freiburg, Germany.
Thomas WelteInstitut für Biochemie und Molekularbiologie, ZBMZ, 79104 Freiburg, Germany.
Bettina KnappFakultät für Biologie, 79104 Freiburg, Germany.
Friedel DrepperFakultät für Biologie, 79104 Freiburg, Germany; BIOSS Centre for Biological Signalling Studies, Zentrum für Biologische Signalstudien, Albert-Ludwigs-Universität Freiburg, 79104 Freiburg, Germany.
Bettina WarscheidFakultät für Biologie, 79104 Freiburg, Germany; BIOSS Centre for Biological Signalling Studies, Zentrum für Biologische Signalstudien, Albert-Ludwigs-Universität Freiburg, 79104 Freiburg, Germany.
Hans-Georg KochInstitut für Biochemie und Molekularbiologie, ZBMZ, 79104 Freiburg, Germany; Spemann Graduate School of Biology and Medicine (SGBM), 79104 Freiburg, Germany. Electronic address: Hans-Georg.Koch@biochemie.uni-freiburg.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Most membrane proteins are co-translationally inserted into the lipid bilayer via the universally conserved SecY complex and they access the lipid phase presumably via a lateral gate in SecY. In bacteria, the lipid transfer of membrane proteins from the SecY channel is assisted by the SecY-associated protein YidC, but details on the SecY-YidC interaction are unknown. By employing an in vivo and in vitro site-directed cross-linking approach, we have mapped the SecY-YidC interface and found YidC in contact with all four transmembrane domains of the lateral gate. This interaction did not require the SecDFYajC complex and was not influenced by SecA binding to SecY. In contrast, ribosomes dissociated the YidC contacts to lateral gate helices 2b and 8. The major contact between YidC and the lateral gate was lost in the presence of ribosome nascent chains and new SecY-YidC contacts appeared. These data demonstrate that the SecY-YidC interaction is influenced by nascent-membrane-induced lateral gate movements.

Indexed as

Escherichia coliEscherichia coli ProteinsLipid BilayersMembrane ProteinsMembrane Transport ProteinsPeptide MappingProtein BindingProtein TransportSEC Translocation ChannelsEscherichia coli ProteinsLipid BilayersMembrane ProteinsMembrane Transport ProteinsSecE protein, E coliSecG protein, E coliSEC Translocation ChannelsSecY protein, E coliYIDC protein, E coliMembrane BiogenesisMembrane TraffickingProtein TargetingSecretionSignal Recognition Particle

Identifiers

PMID23609445
PMCPMC3675568

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.