Evidence map›Paper›PMID 23607523›Full record

ArticleJournal of natural products2013

Genetic insights into pyralomicin biosynthesis in Nonomuraea spiralis IMC A-0156.

Patricia M Flatt, Xiumei Wu, Steven Perry, Taifo Mahmud

Abstract read
In one paragraph

Article in Journal of natural products, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Mzabimycins A and B, novel intracellular angucycline antibiotics produced bySaudi pharmaceutical journal : SPJ : the official publication of the Saudi Pharmaceutical Society · 2019
    Article
  10. Review
  11. Evolution and Distribution of CACS chemical biology · 2017
    Article
  12. Review
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Patricia M FlattDepartment of Pharmaceutical Sciences, Oregon State University, Corvallis, OR 97331-3507, United States.
Xiumei Wu
Steven Perry
Taifo Mahmud

Funding

BIOSYNTHESIS APPROACH TO NOVEL BIOACTIVE AMINOCYCLITOLSR01AI061528 · NIAID · OREGON STATE UNIVERSITY · PI MAHMUD, TAIFO · 2004 to 2010
$1.5M
NIAID NIH HHS R01 AI061528NIAID NIH HHS R01AI061528
6 · The paper itself

Abstract

The biosynthetic gene cluster for the pyralomicin antibiotics has been cloned and sequenced from Nonomuraea spiralis IMC A-0156. The 41 kb gene cluster contains 27 ORFs predicted to encode all of the functions for pyralomicin biosynthesis. This includes nonribosomal peptide synthetases (NRPS) and polyketide synthases (PKS) required for the formation of the benzopyranopyrrole core unit, as well as a suite of tailoring enzymes (e.g., four halogenases, an O-methyltransferase, and an N-glycosyltransferase) necessary for further modifications of the core structure. The N-glycosyltransferase is predicted to transfer either glucose or a pseudosugar (cyclitol) to the aglycone. A gene cassette encoding C7-cyclitol biosynthetic enzymes was identified upstream of the benzopyranopyrrole-specific ORFs. Targeted disruption of the gene encoding the N-glycosyltransferase, prlH, abolished pyralomicin production, and recombinant expression of PrlA confirms the activity of this enzyme as a sugar phosphate cyclase involved in the formation of the C7-cyclitol moiety.

Indexed as

ActinobacteriaAnti-Bacterial AgentsBacterial ProteinsChromonesCyclitolsElectron Spin Resonance SpectroscopyGlucosyltransferasesMolecular StructureMultigene FamilyPeptide SynthasesPolyketide SynthasesPyrrolesAnti-Bacterial AgentsBacterial ProteinsChromonesCyclitolsGlucosyltransferasesN-glycosyltransferase, Nocardia aerocolonigenesnon-ribosomal peptide synthasePeptide SynthasesPolyketide Synthasespyralomicin 1aPyrroles

Identifiers

PMID23607523
PMCPMC3684624

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.