ArticlePlant physiology2013
Identifying genotype-by-environment interactions in the metabolism of germinating arabidopsis seeds using generalized genetical genomics.
Article in Plant physiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
22 citing papers in PubMed.
- Exploring seed characteristics and performance through advanced physico-chemical techniques.Scientific reports · 2024Article
- Screening and functional verification of drought resistance-related genes in castor bean seeds.BMC plant biology · 2024Article
- A guided network estimation approach using multi-omic information.BMC bioinformatics · 2024Article
- Exogenous Spermidine Promotes Germination of Aged Sorghum Seeds by Mediating Sugar Metabolism.Plants (Basel, Switzerland) · 2022Article
- High-throughput phenotyping of physiological traits for wheat resilience to high temperature and drought stress.Journal of experimental botany · 2022Article
- Key Metabolite Differences Between Korean Pine (Frontiers in plant science · 2021Article
- Network Analysis PrioritizesG3 (Bethesda, Md.) · 2020Article
- Metabolite Profile of Xylem Sap in Cotton Seedlings Is Changed by K Deficiency.Frontiers in plant science · 2020Article
- Transcriptomic Analysis of Seed Germination Under Salt Stress in Two Desert Sister Species (Frontiers in genetics · 2019Article
- Dormancy release and germination of Taxus yunnanensis seeds during wet sand storage.Scientific reports · 2018Article
- Metabolite profiling and associated gene expression reveal two metabolic shifts during the seed-to-seedling transition in Arabidopsis thaliana.Plant molecular biology · 2017Article
- Differentially expressed genes during the imbibition of dormant and after-ripened seeds - a reverse genetics approach.BMC plant biology · 2017Article
- Genetic dissection of metabolite variation in Arabidopsis seeds: evidence for mQTL hotspots and a master regulatory locus of seed metabolism.Journal of experimental botany · 2017Article
- Metabolomic analysis of tomato seed germination.Metabolomics : Official journal of the Metabolomic Society · 2017Article
- Network-Guided GWAS Improves Identification of Genes Affecting Free Amino Acids.Plant physiology · 2017Article
- Bulked sample analysis in genetics, genomics and crop improvement.Plant biotechnology journal · 2016Review
- The Arabidopsis MYB96 Transcription Factor Is a Positive Regulator of ABSCISIC ACID-INSENSITIVE4 in the Control of Seed Germination.Plant physiology · 2015Article
- Metabolic patterns associated with the seasonal rhythm of seed survival after dehydration in germinated seeds of Schismus arabicus.BMC plant biology · 2015Article
- Advanced phenotyping and phenotype data analysis for the study of plant growth and development.Frontiers in plant science · 2015Review
- Dissecting the phenotypic components of crop plant growth and drought responses based on high-throughput image analysis.The Plant cell · 2014Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
A complex phenotype such as seed germination is the result of several genetic and environmental cues and requires the concerted action of many genes. The use of well-structured recombinant inbred lines in combination with "omics" analysis can help to disentangle the genetic basis of such quantitative traits. This so-called genetical genomics approach can effectively capture both genetic and epistatic interactions. However, to understand how the environment interacts with genomic-encoded information, a better understanding of the perception and processing of environmental signals is needed. In a classical genetical genomics setup, this requires replication of the whole experiment in different environmental conditions. A novel generalized setup overcomes this limitation and includes environmental perturbation within a single experimental design. We developed a dedicated quantitative trait loci mapping procedure to implement this approach and used existing phenotypical data to demonstrate its power. In addition, we studied the genetic regulation of primary metabolism in dry and imbibed Arabidopsis (Arabidopsis thaliana) seeds. In the metabolome, many changes were observed that were under both environmental and genetic controls and their interaction. This concept offers unique reduction of experimental load with minimal compromise of statistical power and is of great potential in the field of systems genetics, which requires a broad understanding of both plasticity and dynamic regulation.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.