Evidence map›Paper›PMID 23606541›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2013

Antigen-stimulated CD4 T cell expansion can be limited by their grazing of peptide-MHC complexes.

Rob J De Boer, Alan S Perelson

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.3field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Modeling T Cell Fate.Annual review of immunology · 2023
    Review
  3. Article
  4. Article
  5. How a well-adapting immune system remembers.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  6. Regulation of T cell expansion by antigen presentation dynamics.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 2 countries.

Rob J De BoerTheoretical Biology and Bioinformatics, Utrecht University, 3584 CH Utrecht, The Netherlands. r.j.deboer@uu.nl
Alan S Perelson
Los Alamos National Laboratory · USSanta Fe Institute · US

Funding

Visualizing, Quantifying, and Modeling of T Cell Response to Listeria InfectionP01AI071195 · NIAID · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI DUSTIN, MICHAEL LORAN · 2006 to 2010
$8.1M
Modeling Viral and T Lymphocyte DynamicsR01OD011095 · OD · TRIAD NATIONAL SECURITY, LLC · PI PERELSON, ALAN S · 2012 to 2024
$5.0M
COBRE Center for Evolutionary and Theoretical ImmunologyP20GM103452 · NIGMS · UNIVERSITY OF NEW MEXICO · PI LOKER, ERIC SAMUEL · 2012 to 2013
$4.2M
Immune System Modeling/HIVR01AI028433 · NIAID · UNIVERSITY OF CALIF-LOS ALAMOS NAT LAB · PI PERELSON, ALAN S · 1990 to 2021
$3.7M
Immune System Modeling/HIVR37AI028433 · NIAID · UNIVERSITY OF CALIF-LOS ALAMOS NAT LAB · PI PERELSON, ALAN S · 2002 to 2011
$2.4M
NIAID NIH HHS AI028433NIAID NIH HHS HHSN272201000055CNIAID NIH HHS P01 AI071195NIAID NIH HHS P01-AI071195NIAID NIH HHS R01 AI028433NIAID NIH HHS R37 AI028433NIGMS NIH HHS P20 GM103452NIGMS NIH HHS P20-GM103452NIH HHS OD011095NIH HHS R01 OD011095
6 · The paper itself

Abstract

It was recently shown that the expansion of CD4(+) T cells during a primary immune reaction to a peptide from cytochrome c decreases ~0.5 log for every log increase in the number of cognate precursor cells, and that this remains valid over more than four orders of magnitude (Quiel et al. 2011. Proc. Natl. Acad. Sci. USA. 108: 3312-3317). This observed "power law" was explained by a mechanism where nondividing mature T cells inhibit the proliferation of less-differentiated cells of the same specificity. In this article, we interpret the same data by a mechanism where CD4(+) T cells acquire cognate peptide-MHC (pMHC) complexes from the surface of APCs, thereby increasing the loss rate of pMHC. We show that a mathematical model implementing this "T cell grazing" mechanism, and having a T cell proliferation rate that is determined by the concentration of pMHC, explains the data equally well. As a consequence, the data no longer unequivocally support the previous explanation, and the increased loss of pMHC complexes on APCs at high T cell densities is an equally valid interpretation of this striking data.

Indexed as

AlgorithmsAnimalsAntigen PresentationAntigensCD4-Positive T-LymphocytesHLA AntigensHumansModels, ImmunologicalOligopeptidesPeptidesAntigensHLA AntigensMHC binding peptideOligopeptidesPeptides

Identifiers

PMID23606541
PMCPMC3661195
OpenAlexW2144967688

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.