Evidence map›Paper›PMID 23606399›Full record

ArticleHuman mutation2013

A polymorphism affecting MYB binding within the promoter of the PDCD4 gene is associated with severe asthma in children.

Aristea Binia, Nicole Van Stiphout, Liming Liang, Sven Michel, Pankaj K Bhavsar, K Fan Chung, Chris E Brightling, Peter J Barnes, Michael Kabesch, Andrew Bush and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Human mutation, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 23 citations in OpenAlex.

  1. Single-Nucleotide Polymorphisms of IL-17 Gene Are Associated with Asthma Susceptibility in an Asian Population.Medical science monitor : international medical journal of experimental and clinical research · 2016
    Pooled it
  2. Review
  3. Article
  4. Review
  5. Control Mechanisms of the Tumor Suppressor PDCD4: Expression and Functions.International journal of molecular sciences · 2019
    Review
  6. Pleiotropic microRNA-21 in pulmonary remodeling: novel insights for molecular mechanism and present advancements.Allergy, asthma, and clinical immunology : official journal of the Canadian Society of Allergy and Clinical Immunology · 2019
    Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 4 countries.

Aristea BiniaMolecular Genetics and Genomics Section, National Heart and Lung Institute, Imperial College London, London, United Kingdom. aristea.binia@rdls.nestle.com
Nicole Van Stiphout
Liming Liang
Sven Michel
Pankaj K Bhavsar
K Fan Chung
Chris E Brightling
Peter J Barnes
Michael Kabesch
Andrew Bush
William O C Cookson
Miriam F Moffatt
National Institutes of Health · USImperial College London · GBUniversity Hospital Regensburg · DEHarvard University · USUniversity of Leicester · GB

Funding

Wellcome Trust 097117Wellcome Trust WT077959/Z/05/Z
6 · The paper itself

Abstract

A previous genome-wide association study in asthma revealed putative associations that merit further investigation. In this study, the genome-wide significant associations of SNPs at the 5% false discovery rate were examined in independent groups of severe asthmatics. The panel consisted of 397 severe asthmatic adults, 116 severe asthmatic children, and a collection of 207 family-trios with an asthmatic proband. Three SNPs in the PDCD4 gene (rs6585018:G>A, rs1322997:C>A, and rs34104444:G>A) were significantly associated with severe childhood asthma (P values: 0.003, 0.002, 0.004) and total immunoglobulin E (IgE) levels (P values: 0.034, 0.041, 0.052). In an independent group of 234 asthmatic children and 652 controls, PDCD4 SNPs rs1407696:T>G and rs11195360:T>C were associated with total IgE levels (P values: 0.006, 0.014). In silico analysis of PDCD4 locus showed that rs6585018:G>A had the potential to affect MYB transcription factor binding, shown to act as a PDCD4-transcription inducer. Electromobility shift assays and reporter assays revealed that rs6585018:G>A alters MYB binding thereby influencing the expression of PDCD4. SNPs within MYB itself confer susceptibility to eosinophilia and asthma. Our association between a variant MYB binding site in PDCD4 and the severest form of childhood asthma therefore suggests that PDCD4 is a novel molecule of importance to asthmatic inflammatory responses.

Indexed as

Polymorphism, Single NucleotidePromoter Regions, GeneticAdultApoptosis Regulatory ProteinsAsthmaBinding SitesCase-Control StudiesCell LineChildFemaleGenome-Wide Association StudyHaplotypesHumansImmunoglobulin EMaleProto-Oncogene Proteins c-mybApoptosis Regulatory ProteinsImmunoglobulin EPDCD4 protein, humanProto-Oncogene Proteins c-mybRNA-Binding ProteinsasthmachildhoodMYBPDCD4severe

Identifiers

PMID23606399
PMCPMC4296222
OpenAlexW1999991110

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.