Evidence map›Paper›PMID 23603790›Full record

ArticleBiochimica et biophysica acta2013

The human secretome atlas initiative: implications in health and disease conditions.

Kristy J Brown, Haeri Seol, Dinesh K Pillai, Binu-John Sankoorikal, Catherine A Formolo, Jenny Mac, Nathan J Edwards, Mary C Rose, Yetrib Hathout

Abstract read
In one paragraph

Article in Biochimica et biophysica acta, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Emerging Role of Neuron-Glia in Neurological Disorders: At a Glance.Oxidative medicine and cellular longevity · 2022
    Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Secretome-Based Screening in Target Discovery.SLAS discovery : advancing life sciences R & D · 2020
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kristy J BrownCenter for Genetic Medicine Research, Children's National Medical Center, Washington DC 20010, USA.
Haeri Seol
Dinesh K Pillai
Binu-John Sankoorikal
Catherine A Formolo
Jenny Mac
Nathan J Edwards
Mary C Rose
Yetrib Hathout

Funding

NEUROIMAGING COREP30HD040677 · NICHD · CHILDREN'S RESEARCH INSTITUTE · PI VITTORIO GALLO, VITTORIO GALLO VITTORIO GALLO · 2001 to 2015
$15.9M
NCMRR-DC Core Molecular & Functional Outcome Measures in Rehabilitation MedicineR24HD050846 · NICHD · CHILDREN'S RESEARCH INSTITUTE · PI KNOBLACH, SUSAN M · 2005 to 2014
$8.6M
CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR031988 · NCRR · CHILDREN'S RESEARCH INSTITUTE · PI JOSEPH, JILL G · 2010 to 2011
$8.2M
Genetics and Genomic Approaches to Lung Diseases and Disorders in Washington, DCK12HL090020 · NHLBI · CHILDREN'S RESEARCH INSTITUTE · PI HOFFMAN, ERIC P. · 2007 to 2012
$2.0M
NCRR NIH HHS UL1 RR031988NCRR NIH HHS UL1RR031988NHLBI NIH HHS K12 HL090020NHLBI NIH HHS K12 HL090020-05NICHD NIH HHS 2R24HD050846-06NICHD NIH HHS 5P30HD040677-10NICHD NIH HHS P30 HD040677NICHD NIH HHS R24 HD050846
6 · The paper itself

Abstract

Proteomic analysis of human body fluids is highly challenging, therefore many researchers are redirecting efforts toward secretome profiling. The goal is to define potential biomarkers and therapeutic targets in the secretome that can be traced back in accessible human body fluids. However, currently there is a lack of secretome profiles of normal human primary cells making it difficult to assess the biological meaning of current findings. In this study we sought to establish secretome profiles of human primary cells obtained from healthy donors with the goal of building a human secretome atlas. Such an atlas can be used as a reference for discovery of potential disease associated biomarkers and eventually novel therapeutic targets. As a preliminary study, secretome profiles were established for six different types of human primary cell cultures and checked for overlaps with the three major human body fluids including plasma, cerebrospinal fluid and urine. About 67% of the 1054 identified proteins in the secretome of these primary cells occurred in at least one body fluid. Furthermore, comparison of the secretome profiles of two human glioblastoma cell lines to this new human secretome atlas enabled unambiguous identification of potential brain tumor biomarkers. These biomarkers can be easily monitored in different body fluids using stable isotope labeled standard proteins. The long term goal of this study is to establish a comprehensive online human secretome atlas for future use as a reference for any disease related secretome study. This article is part of a Special Issue entitled: An Updated Secretome.

Indexed as

BiomarkersBody FluidsCell Line, TumorCells, CulturedGlioblastomaHumansProteomeProteomicsTandem Mass SpectrometryBiomarkersProteomeBiomarkerBody fluidGlioblastomaPrimary cellSecretomeStable isotope

Identifiers

PMID23603790
PMCPMC3755092

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.