Evidence map›Paper›PMID 23603270›Full record

ArticleJournal of structural biology2014

Design of net-charged abc-type collagen heterotrimers.

Avanish S Parmar, Sohail Zahid, Sandeep V Belure, Robert Young, Nida Hasan, Vikas Nanda

Abstract read
In one paragraph

Article in Journal of structural biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. De Novo Design of Specific Heterotrimeric Collagen-Like Peptides via Genetic Algorithm.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  2. Hybrid peptides as platform for synchronized combination therapy.Colloids and surfaces. B, Biointerfaces · 2023
    Article
  3. Article
  4. Multicomponent peptide assemblies.Chemical Society reviews · 2018
    Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Avanish S ParmarDepartment of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, UMDNJ and Center for Advanced Biotechnology and Medicine, Piscataway, NJ 08854, United States.
Sohail ZahidDepartment of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, UMDNJ and Center for Advanced Biotechnology and Medicine, Piscataway, NJ 08854, United States.
Sandeep V BelureDepartment of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, UMDNJ and Center for Advanced Biotechnology and Medicine, Piscataway, NJ 08854, United States.
Robert YoungDepartment of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, UMDNJ and Center for Advanced Biotechnology and Medicine, Piscataway, NJ 08854, United States.
Nida HasanDepartment of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, UMDNJ and Center for Advanced Biotechnology and Medicine, Piscataway, NJ 08854, United States.
Vikas NandaDepartment of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, UMDNJ and Center for Advanced Biotechnology and Medicine, Piscataway, NJ 08854, United States. Electronic address: nanda@cabm.rutgers.edu.

Funding

Computational Design of a Synthetic Extracellular MatrixDP2OD006478 · OD · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI NANDA, VIKAS · 2009 to 2009
$2.3M
NIH HHS DP2 OD006478NIH HHS DP2-OD-006478-1
6 · The paper itself

Abstract

Net-negatively-charged heterospecific A:B:C collagen peptide heterotrimers were designed using an automated computational approach. The design algorithm considers both target stability and the energy gap between the target states and misfolded competing states. Structural characterization indicates the net-negative charge balance on the new designs enhances the specificity of the target state at the expense of its stability.

Indexed as

Amino Acid SequenceCollagen Type IIICollagen Type VIComputer SimulationModels, MolecularMolecular Sequence DataProtein BindingProtein EngineeringProtein MultimerizationProtein StabilityProtein Structure, QuaternaryProtein Structure, SecondaryCollagen Type IIICollagen Type VICollagenElectrostaticsProtein designTriple-helix

Identifiers

PMID23603270
PMCPMC3874424

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.