ArticleJournal of proteomics2013
Pride-asap: automatic fragment ion annotation of identified PRIDE spectra.
Article in Journal of proteomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
9 citing papers in PubMed.
- lesSDRF is more: maximizing the value of proteomics data through streamlined metadata annotation.Nature communications · 2023Article
- Novel Plaque Enriched Long Noncoding RNA in Atherosclerotic Macrophage Regulation (PELATON).Arteriosclerosis, thrombosis, and vascular biology · 2020Article
- xiSPEC: web-based visualization, analysis and sharing of proteomics data.Nucleic acids research · 2018Article
- The online Tabloid Proteome: an annotated database of protein associations.Nucleic acids research · 2018Article
- Unbiased Protein Association Study on the Public Human Proteome Reveals Biological Connections between Co-Occurring Protein Pairs.Journal of proteome research · 2017Article
- Public proteomics data: How the field has evolved from sceptical inquiry to the promise ofEuPA open proteomics · 2016Article
- sORFs.org: a repository of small ORFs identified by ribosome profiling.Nucleic acids research · 2016Article
- Exploring the potential of public proteomics data.Proteomics · 2016Review
- An update on LNCipedia: a database for annotated human lncRNA sequences.Nucleic acids research · 2015Article
Corrections and comments
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Authors and funding
6 authors.
Funding
Abstract
We present an open source software application and library written in Java that provides a uniform annotation of identified spectra stored in the PRIDE database. Pride-asap can be ran in a command line mode for automated processing of multiple PRIDE experiments, but also has a graphical user interface that allows end users to annotate the spectra in PRIDE experiments and to inspect the results in detail. Pride-asap binaries, source code and additional information can be downloaded from http://pride-asa-pipeline.googlecode.com.This article is part of a Special Issue entitled: Standardization and Quality Control in Proteomics.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.