Evidence map›Paper›PMID 23602905›Full record

ArticleAdvanced drug delivery reviews2013

Statistical analysis of big data on pharmacogenomics.

Jianqing Fan, Han Liu

Abstract read
In one paragraph

Article in Advanced drug delivery reviews, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Big data in medicine is driving big changes.Yearbook of medical informatics · 2014
    Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Jianqing FanDepartment of Operations Research and Financial Engineering, Princeton University, Princeton, NJ 08544, USA. jqfan@princeton.edu
Han Liu

Funding

Statistical Methods for Ultrahigh-dimensional Biomedical DataR01GM072611 · NIGMS · PRINCETON UNIVERSITY · PI CATTANEO, MATIAS DAMIAN · 2006 to 2021
$4.2M
Quantitative Methods for Genome-wide Analysis of Macrophage Activation by ESCsR01GM100474 · NIGMS · PRINCETON UNIVERSITY · PI FAN, JIANQING · 2011 to 2014
$1.5M
NIGMS NIH HHS R01 GM072611NIGMS NIH HHS R01-GM072611NIGMS NIH HHS R01 GM100474NIGMS NIH HHS R01GM100474
6 · The paper itself

Abstract

This paper discusses statistical methods for estimating complex correlation structure from large pharmacogenomic datasets. We selectively review several prominent statistical methods for estimating large covariance matrix for understanding correlation structure, inverse covariance matrix for network modeling, large-scale simultaneous tests for selecting significantly differently expressed genes and proteins and genetic markers for complex diseases, and high dimensional variable selection for identifying important molecules for understanding molecule mechanisms in pharmacogenomics. Their applications to gene network estimation and biomarker selection are used to illustrate the methodological power. Several new challenges of Big data analysis, including complex data distribution, missing data, measurement error, spurious correlation, endogeneity, and the need for robust statistical methods, are also discussed.

Indexed as

Models, StatisticalPharmacogeneticsData Interpretation, StatisticalHumans

Identifiers

PMID23602905
PMCPMC3701723

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.