Evidence map›Paper›PMID 23599692›Full record

ArticlePLoS genetics2013

Mutations in LRRC50 predispose zebrafish and humans to seminomas.

Sander G Basten, Erica E Davis, Ad J M Gillis, Ellen van Rooijen, Hans Stoop, Nikolina Babala, Ive Logister, Zachary G Heath, Trudy N Jonges, Nicholas Katsanis and 7 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 41 citations in OpenAlex.

  1. Exome sequencing-based identification ofFrontiers in molecular biosciences · 2026
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  18. Zebrafish as a Model for Human Ciliopathies.Journal of genetics and genomics = Yi chuan xue bao · 2016
    Review
  19. Zebrafish Germ Cell Tumors.Advances in experimental medicine and biology · 2016
    Review
  20. A fresh look at zebrafish from the perspective of cancer research.Journal of experimental & clinical cancer research : CR · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 2 countries.

Sander G BastenDepartment of Medical Oncology, University Medical Center Utrecht, Utrecht, The Netherlands.
Erica E Davis
Ad J M Gillis
Ellen van Rooijen
Hans Stoop
Nikolina Babala
Ive Logister
Zachary G Heath
Trudy N Jonges
Nicholas Katsanis
Emile E Voest
Freek J van Eeden
Rene H Medema
René F Ketting
Stefan Schulte-Merker
Leendert H J Looijenga
Rachel H Giles
University Medical Center Utrecht · NLDuke Medical Center · USErasmus MC Cancer Institute · NLHubrecht Institute for Developmental Biology and Stem Cell Research · NLDuke University Hospital · US

Funding

Genetic and Functional Studies of Human Ciliary SyndromesR01DK072301 · NIDDK · LURIE CHILDREN'S HOSPITAL OF CHICAGO · PI DAVIS, ERICA ELLEN · 2005 to 2022
$7.2M
The Role of Basa Bodies in Wnt SignalingR01DK075972 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI KATSANIS, NICHOLAS · 2007 to 2015
$3.1M
NICHD NIH HHS R01HD04260NIDDK NIH HHS R01 DK072301NIDDK NIH HHS R01DK072301NIDDK NIH HHS R01 DK075972NIDDK NIH HHS R01DK075972
6 · The paper itself

Abstract

Seminoma is a subclass of human testicular germ cell tumors (TGCT), the most frequently observed cancer in young men with a rising incidence. Here we describe the identification of a novel gene predisposing specifically to seminoma formation in a vertebrate model organism. Zebrafish carrying a heterozygous nonsense mutation in Leucine-Rich Repeat Containing protein 50 (lrrc50 also called dnaaf1), associated previously with ciliary function, are found to be highly susceptible to the formation of seminomas. Genotyping of these zebrafish tumors shows loss of heterozygosity (LOH) of the wild-type lrrc50 allele in 44.4% of tumor samples, correlating with tumor progression. In humans we identified heterozygous germline LRRC50 mutations in two different pedigrees with a family history of seminomas, resulting in a nonsense Arg488* change and a missense Thr590Met change, which show reduced expression of the wild-type allele in seminomas. Zebrafish in vivo complementation studies indicate the Thr590Met to be a loss-of-function mutation. Moreover, we show that a pathogenic Gln307Glu change is significantly enriched in individuals with seminoma tumors (13% of our cohort). Together, our study introduces an animal model for seminoma and suggests LRRC50 to be a novel tumor suppressor implicated in human seminoma pathogenesis.

Indexed as

SeminomaZebrafishAnimalsGenes, Tumor SuppressorGenotypeHumansMutation

Identifiers

PMID23599692
PMCPMC3627517
OpenAlexW2066961718

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.