Evidence map›Paper›PMID 23599271›Full record

ArticleJournal of experimental botany2013

Galacturonosyltransferase 4 silencing alters pectin composition and carbon partitioning in tomato.

Fabiana de Godoy, Luisa Bermúdez, Bruno Silvestre Lira, Amanda Pereira de Souza, Paula Elbl, Diego Demarco, Saleh Alseekh, Marina Insani, Marcos Buckeridge, Juliana Almeida and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 40 citations in OpenAlex.

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  8. Downregulation of pectin biosynthesis geneCommunications biology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Fabiana de GodoyDepartamento de Botânica-IB-USP, 277, 05508-900, São Paulo, SP, Brazil.
Luisa Bermúdez
Bruno Silvestre Lira
Amanda Pereira de Souza
Paula Elbl
Diego Demarco
Saleh Alseekh
Marina Insani
Marcos Buckeridge
Juliana Almeida
Gabriela Grigioni
Alisdair Robert Fernie
Fernando Carrari
Magdalena Rossi
Instituto de Botânica · BRIBM Research - Brazil · BRMax Planck Institute of Molecular Plant Physiology · DENational Institute of Industrial Technology · ARNational Agricultural Technology Institute · AR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pectin is a main component of the plant cell wall and is the most complex family of polysaccharides in nature. Its composition is essential for the normal growth and morphology pattern, as demonstrated by pectin-defective mutant phenotypes. Besides this basic role in plant physiology, in tomato, pectin structure contributes to very important quality traits such as fruit firmness. Sixty-seven different enzymatic activities have been suggested to be required for pectin biosynthesis, but only a few genes have been identified and studied so far. This study characterized the tomato galacturonosyltransferase (GAUT) family and performed a detailed functional study of the GAUT4 gene. The tomato genome harbours all genes orthologous to those described previously in Arabidopsis thaliana, and a transcriptional profile revealed that the GAUT4 gene was expressed at higher levels in developing organs. GAUT4-silenced tomato plants exhibited an increment in vegetative biomass associated with palisade parenchyma enlargement. Silenced fruits showed an altered pectin composition and accumulated less starch along with a reduced amount of pectin, which coincided with an increase in firmness. Moreover, the harvest index was dramatically reduced as a consequence of the reduction in the fruit weight and number. Altogether, these results suggest that, beyond its role in pectin biosynthesis, GAUT4 interferes with carbon metabolism, partitioning, and allocation. Hence, this cell-wall-related gene seems to be key in determining plant growth and fruit production in tomato.

Indexed as

Ascorbic AcidCell WallCloning, MolecularFruitGas Chromatography-Mass SpectrometryGenes, PlantMicroscopy, ConfocalPectinsPhotosynthesisPlant ProteinsReal-Time Polymerase Chain ReactionSilencer Elements, TranscriptionalSolanum lycopersicumUronic AcidsAscorbic AcidPectinsPlant ProteinsUronic Acidsfruit metabolismgalacturonic acidgalacturonosyltransferasepectinSolanum pennelliitomato.

Identifiers

PMID23599271
PMCPMC3654432
OpenAlexW2165549943

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.