Evidence map›Paper›PMID 23599000›Full record

ArticleNucleic acids research2013

A novel role for Sem1 and TREX-2 in transcription involves their impact on recruitment and H2B deubiquitylation activity of SAGA.

Encar García-Oliver, Pau Pascual-García, Varinia García-Molinero, Tineke L Lenstra, Frank C P Holstege, Susana Rodríguez-Navarro

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.3field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

  1. Sus1 Modulates Chromatin Remodeling and Gene Expression via the Cell Wall Integrity Pathway in Saccharomyces cerevisiae.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Encar García-OliverCentro de Investigación Príncipe Felipe, Gene Expression and RNA Metabolism Laboratory, Eduardo Primo Yúfera, 3, Valencia E-46012, Spain.
Pau Pascual-García
Varinia García-Molinero
Tineke L Lenstra
Frank C P Holstege
Susana Rodríguez-Navarro
Utrecht University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transcription and mRNA export are linked processes. However, the molecular mechanisms of this coordination are not clear. Sus1 (hENY2) participates in this coordination as part of two protein complexes: SAGA, a transcriptional co-activator; TREX-2, which functions in mRNA biogenesis and export. Here, we investigate the coordinated action of SAGA and TREX-2 required for gene expression. We demonstrate that TREX-2 subunit Sem1 also participates in transcription activation. Like Sus1, Sem1 is required for the induction of ARG1 and GAL1, these being SAGA-regulated genes. Chromatin immunoprecipitations show that proper recruitment of certain SAGA subunits to the GAL1 promoter depends on Sem1. Notably, both in vivo and in vitro analyses reveal that Sem1 influences SAGA-dependent histone H2B deubiquitylation. Most of these phenotypes are also found to depend on another TREX-2 subunit, Thp1. These results unveil a new role for Sem1 in the activation of the SAGA-dependent gene GAL1 and influencing H2B deubiquitylation. Our work provides insights into a novel functional relationship between Sem1 and the SAGA complex.

Indexed as

Gene Expression Regulation, FungalTranscriptional ActivationArginaseGalactokinaseHistonesNuclear ProteinsPromoter Regions, GeneticProteasome Endopeptidase ComplexProtein SubunitsRibonucleoproteinsRNA-Binding ProteinsSaccharomyces cerevisiae ProteinsTrans-ActivatorsUbiquitinationARG1 protein, S cerevisiaeArginaseGAL1 protein, S cerevisiaeGalactokinaseHistonesNuclear ProteinsProteasome Endopeptidase ComplexProtein SubunitsRibonucleoproteinsRNA-Binding ProteinsSaccharomyces cerevisiae ProteinsSAGA complex, S cerevisiaeSEM1 protein, S cerevisiaeSus1 protein, S cerevisiaeThp1 protein, S cerevisiaeTrans-Activators

Identifiers

PMID23599000
PMCPMC3675487
OpenAlexW2023694228

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.