Evidence map›Paper›PMID 23597261›Full record

ArticleBiochemistry2013

Structure and dynamics of the fish eye lens protein, γM7-crystallin.

Bryon Mahler, Yingwei Chen, Jason Ford, Caleb Thiel, Graeme Wistow, Zhengrong Wu

Abstract read
In one paragraph

Article in Biochemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. The βγ-crystallins: native state stability and pathways to aggregation.Progress in biophysics and molecular biology · 2014
    Review
  12. Review
  13. Solution properties of γ-crystallins: hydration of fish and mammal γ-crystallins.Protein science : a publication of the Protein Society · 2014
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Bryon Mahler *Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States.
Yingwei Chen *Section on Molecular Structure and Function, National Eye Institute, National Institutes of Health, Bethesda, Maryland 20892, United States.
Jason FordDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States.
Caleb ThielDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States.
Graeme WistowSection on Molecular Structure and Function, National Eye Institute, National Institutes of Health, Bethesda, Maryland 20892, United States.
Zhengrong WuDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States.
The Ohio State University · USNational Institutes of Health · US

Funding

Molecular Structure and Function of CrystallinsZIAEY000255 · NEI · NATIONAL EYE INSTITUTE · PI WISTOW, GRAEME J · 2009 to 2025
$6.6M
Bax Activation Mechanism in the CytosolR01AG031903 · NIA · CASE WESTERN RESERVE UNIVERSITY · PI MATSUYAMA, SHIGEMI · 2008 to 2012
$1.4M
Structural and functional studies of gammaS-crystallin and its mutant opjR21EY018423 · NEI · OHIO STATE UNIVERSITY · PI WU, ZHENGRONG · 2007 to 2008
$409k
Intramural NIH HHS ZIA EY000255NEI NIH HHS R21 EY018423NEI NIH HHS R21EY018423NIA NIH HHS R01 AG031903NIA NIH HHS R01AG031903
6 · The paper itself

Abstract

The vertebrate eye lens contains high concentrations of crystallins. The dense lenses of fish are particularly abundant in a class called γM-crystallin whose members are characterized by an unusually high methionine content and partial loss of the four tryptophan residues conserved in all γ-crystallins from mammals which are proposed to contribute to protection from UV-damage. Here, we present the structure and dynamics of γM7-crystallin from zebrafish (Danio rerio). The solution structure shares the typical two-domain, four-Greek-key motif arrangement of other γ-crystallins, with the major difference noted in the final loop of the N-terminal domain, spanning residues 65-72. This is likely due to the absence of the conserved tryptophans. Many of the methionine residues are exposed on the surface but are mostly well-ordered and frequently have contacts with aromatic side chains. This may contribute to the specialized surface properties of these proteins that exist under high molecular crowding in the fish lens. NMR relaxation data show increased backbone conformational motions in the loop regions of γM7 compared to those of mouse γS-crystallin and show that fast internal motion of the interdomain linker in γ-crystallins correlates with linker length. Unfolding studies monitored by tryptophan fluorescence confirm results from mutant mouse γS-crystallin and show that unfolding of a βγ-crystallin domain likely starts from unfolding of the variable loop containing the more fluorescently quenched tryptophan residue, resulting in a native-like unfolding intermediate.

Indexed as

Amino Acid SequenceAnimalsgamma-CrystallinsMiceModels, MolecularMolecular Sequence DataProtein ConformationProtein FoldingStructure-Activity RelationshipZebrafish Proteinscrystallin, gamma M7, Danio reriogamma-CrystallinsZebrafish Proteins

Identifiers

PMID23597261
PMCPMC3855534
OpenAlexW2049689878

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.