Evidence map›Paper›PMID 23596069›Full record

ArticleNeurology2013

Targeted exome sequencing of suspected mitochondrial disorders.

Daniel S Lieber, Sarah E Calvo, Kristy Shanahan, Nancy G Slate, Shangtao Liu, Steven G Hershman, Nina B Gold, Brad A Chapman, David R Thorburn, Gerard T Berry and 5 more

Open access · bronzeAbstract readCase Reports
In one paragraph

Article in Neurology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 98 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
98citing papers in PubMed, 1 pooled it
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

98 citing papers in PubMed, 1 synthesis or guideline pooled it, 188 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Hyperkinetic Movement Disorder inNeurology international · 2025
    Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Review
  16. A Homozygous Missense Variant inMolecular syndromology · 2024
    Article
  17. Article
  18. Article
  19. Precision mitochondrial medicine.Cambridge prisms. Precision medicine · 2023
    Review
  20. Genomic Strategies in Mitochondrial Diagnostics.Methods in molecular biology (Clifton, N.J.) · 2023
    Article

38 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 2 countries.

Daniel S LieberDepartment of Molecular Biology, Massachusetts General Hospital, Boston, MA, USA.
Sarah E Calvo
Kristy Shanahan
Nancy G Slate
Shangtao Liu
Steven G Hershman
Nina B Gold
Brad A Chapman
David R Thorburn
Gerard T Berry
Jeremy D Schmahmann
Mark L Borowsky
David M Mueller
Katherine B Sims
Vamsi K Mootha
Harvard University · USMurdoch Children's Research Institute · AURosalind Franklin University of Medicine and Science · USBroad Institute · USMassachusetts General Hospital · USRoyal Children's Hospital · AU

Funding

ROLE OF DIETARY CONSTITUENTS ON GENE EXPRESSION IN INTESTINAL EPITHELIUMP30DK040561 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI CHRISTOPHER P DUGGAN · 1994 to 2026
$31.6M
Structure Function of the ATP SynthaseR01GM066223 · NIGMS · ROSALIND FRANKLIN UNIV OF MEDICINE &SCI · PI MUELLER, DAVID MICHAEL · 2002 to 2018
$5.3M
Defining the genetic basis of human respiratory chain diseaseRC2HG005556 · NHGRI · MASSACHUSETTS GENERAL HOSPITAL · PI MOOTHA, VAMSI KRISHNA · 2009 to 2010
$2.3M
Human Mitochondrial Disease: From Novel Gene Variants to Causality and FunctionR01GM097136 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI MOOTHA, VAMSI KRISHNA · 2011 to 2014
$2.0M
NHGRI NIH HHS RC2 HG005556NHGRI NIH HHS RC2HG005556NIDDK NIH HHS P30 DK040561NIGMS NIH HHS R01 GM066223NIGMS NIH HHS R01 GM097136NIGMS NIH HHS R01GM66223
6 · The paper itself

Abstract

objectiveTo evaluate the utility of targeted exome sequencing for the molecular diagnosis of mitochondrial disorders, which exhibit marked phenotypic and genetic heterogeneity.

methodsWe considered a diverse set of 102 patients with suspected mitochondrial disorders based on clinical, biochemical, and/or molecular findings, and whose disease ranged from mild to severe, with varying age at onset. We sequenced the mitochondrial genome (mtDNA) and the exons of 1,598 nuclear-encoded genes implicated in mitochondrial biology, mitochondrial disease, or monogenic disorders with phenotypic overlap. We prioritized variants likely to underlie disease and established molecular diagnoses in accordance with current clinical genetic guidelines.

resultsTargeted exome sequencing yielded molecular diagnoses in established disease loci in 22% of cases, including 17 of 18 (94%) with prior molecular diagnoses and 5 of 84 (6%) without. The 5 new diagnoses implicated 2 genes associated with canonical mitochondrial disorders (NDUFV1, POLG2), and 3 genes known to underlie other neurologic disorders (DPYD, KARS, WFS1), underscoring the phenotypic and biochemical overlap with other inborn errors. We prioritized variants in an additional 26 patients, including recessive, X-linked, and mtDNA variants that were enriched 2-fold over background and await further support of pathogenicity. In one case, we modeled patient mutations in yeast to provide evidence that recessive mutations in ATP5A1 can underlie combined respiratory chain deficiency.

conclusionThe results demonstrate that targeted exome sequencing is an effective alternative to the sequential testing of mtDNA and individual nuclear genes as part of the investigation of mitochondrial disease. Our study underscores the ongoing challenge of variant interpretation in the clinical setting.

Indexed as

AdolescentAdultAmino Acid SequenceChildChild, PreschoolDNA, MitochondrialExomeFemaleGene TargetingGenetic Predisposition to DiseaseHumansInfantInfant, NewbornMaleMiddle AgedMitochondrial DiseasesDNA, Mitochondrial

Identifiers

PMID23596069
PMCPMC3719425
OpenAlexW2043174838

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.