ArticleBioinformatics (Oxford, England)2013
NetworkPrioritizer: a versatile tool for network-based prioritization of candidate disease genes or other molecules.
Article in Bioinformatics (Oxford, England), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
14 citing papers in PubMed.
- Degree Adjusted Large-Scale Network Analysis Reveals Novel Putative Metabolic Disease Genes.Biology · 2021Article
- Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing.Nature communications · 2020Article
- TopControl: A Tool to Prioritize Candidate Disease-associated Genes based on Topological Network Features.Scientific reports · 2019Article
- PathFXweb: a web application for identifying drug safety and efficacy phenotypes.Bioinformatics (Oxford, England) · 2019Article
- A Survey of Gene Prioritization Tools for Mendelian and Complex Human Diseases.Journal of integrative bioinformatics · 2019Review
- Investigation of health benefits of cocoa in human colorectal cancer cell line, HT-29 through interactome analysis.Gastroenterology and hepatology from bed to bench · 2019Article
- Article
- HGPEC: a Cytoscape app for prediction of novel disease-gene and disease-disease associations and evidence collection based on a random walk on heterogeneous network.BMC systems biology · 2017Article
- The Scope of Big Data in One Medicine: Unprecedented Opportunities and Challenges.Frontiers in veterinary science · 2017Review
- Arete - candidate gene prioritization using biological network topology with additional evidence types.BioData mining · 2017Article
- Integromics network meta-analysis on cardiac aging offers robust multi-layer modular signatures and reveals micronome synergism.BMC genomics · 2015Article
- Decoding the complex genetic causes of heart diseases using systems biology.Biophysical reviews · 2015Article
- Proteomic strategies for the discovery of novel diagnostic and therapeutic targets for infectious diseases.Pathogens and disease · 2014Review
- Individuating Possibly Repurposable Drugs and Drug Targets for COVID-19 Treatment Through Hypothesis-Driven Systems Medicine Using CoVex.Assay and drug development technologiesReview
Corrections and comments
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Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
summaryThe prioritization of candidate disease genes is often based on integrated datasets and their network representation with genes as nodes connected by edges for biological relationships. However, the majority of prioritization methods does not allow for a straightforward integration of the user's own input data. Therefore, we developed the Cytoscape plugin NetworkPrioritizer that particularly supports the integrative network-based prioritization of candidate disease genes or other molecules. Our versatile software tool computes a number of important centrality measures to rank nodes based on their relevance for network connectivity and provides different methods to aggregate and compare rankings. AVAILABILITY: NetworkPrioritizer and the online documentation are freely available at http://www.networkprioritizer.de
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.