Evidence map›Paper›PMID 23595147›Full record

ArticleNucleic acids research2013

Nucleocapsid protein structures from orthobunyaviruses reveal insight into ribonucleoprotein architecture and RNA polymerization.

Antonio Ariza, Sian J Tanner, Cheryl T Walter, Kyle C Dent, Dale A Shepherd, Weining Wu, Susan V Matthews, Julian A Hiscox, Todd J Green, Ming Luo and 7 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 83 citations in OpenAlex.

  1. Review
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  4. Review
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  6. Article
  7. Negative and ambisense RNA virus ribonucleocapsids: more than protective armor.Microbiology and molecular biology reviews : MMBR · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 2 countries.

Antonio ArizaSchool of Molecular and Cellular Biology, University of Leeds, Leeds LS2 9JT, UK.
Sian J Tanner
Cheryl T Walter
Kyle C Dent
Dale A Shepherd
Weining Wu
Susan V Matthews
Julian A Hiscox
Todd J Green
Ming Luo
Richard M Elliott
Anthony R Fooks
Alison E Ashcroft
Nicola J Stonehouse
Neil A Ranson
John N Barr
Thomas A Edwards
University of Leeds · GBUniversity of Alabama at Birmingham · USUniversity of St Andrews · GBUniversity of Liverpool · GB

Funding

Biotechnology and Biological Sciences Research Council BB/E012558/1Medical Research Council G0801822Wellcome Trust 086774/Z/08/ZWellcome Trust 099220Wellcome Trust WT084332MAWellcome Trust WT091783MA
6 · The paper itself

Abstract

All orthobunyaviruses possess three genome segments of single-stranded negative sense RNA that are encapsidated with the virus-encoded nucleocapsid (N) protein to form a ribonucleoprotein (RNP) complex, which is uncharacterized at high resolution. We report the crystal structure of both the Bunyamwera virus (BUNV) N-RNA complex and the unbound Schmallenberg virus (SBV) N protein, at resolutions of 3.20 and 2.75 Å, respectively. Both N proteins crystallized as ring-like tetramers and exhibit a high degree of structural similarity despite classification into different orthobunyavirus serogroups. The structures represent a new RNA-binding protein fold. BUNV N possesses a positively charged groove into which RNA is deeply sequestered, with the bases facing away from the solvent. This location is highly inaccessible, implying that RNA polymerization and other critical base pairing events in the virus life cycle require RNP disassembly. Mutational analysis of N protein supports a correlation between structure and function. Comparison between these crystal structures and electron microscopy images of both soluble tetramers and authentic RNPs suggests the N protein does not bind RNA as a repeating monomer; thus, it represents a newly described architecture for bunyavirus RNP assembly, with implications for many other segmented negative-strand RNA viruses.

Indexed as

OrthobunyavirusAmino Acid SequenceModels, MolecularMolecular Sequence DataNucleocapsid ProteinsProtein BindingProtein MultimerizationRibonucleoproteinsRNATranscription, GeneticVirus ReplicationN protein, Bunyamwera bunyavirusNucleocapsid ProteinsRibonucleoproteinsRNA

Identifiers

PMID23595147
PMCPMC3675483
OpenAlexW2123432782

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.