Evidence map›Paper›PMID 23594525›Full record

ArticleHuman heredity2013

Genetic variation at NCAN locus is associated with inflammation and fibrosis in non-alcoholic fatty liver disease in morbid obesity.

Alexis Gorden, Rongze Yang, Laura M Yerges-Armstrong, Kathleen A Ryan, Elizabeth Speliotes, Ingrid B Borecki, Tamara B Harris, Xin Chu, G Craig Wood, Christopher D Still and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Human heredity, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed, 2 pooled it
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 2 syntheses or guidelines pooled it, 89 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Alexis GordenDivision of Gastroenterology, University of Maryland School of Medicine, Baltimore, MD, USA.
Rongze Yang
Laura M Yerges-Armstrong
Kathleen A Ryan
Elizabeth Speliotes
Ingrid B Borecki
Tamara B Harris
Xin Chu
G Craig Wood
Christopher D Still
Alan R Shuldiner
Glenn S Gerhard
GOLD Consortium
Geisinger Health System · USUniversity of Maryland, Baltimore · USNational Institute on Aging · USUnited States Department of Veterans Affairs · USUniversity of Michigan–Ann Arbor · US

Funding

Research BaseP30DK072488 · NIDDK · UNIVERSITY OF MARYLAND BALTIMORE · PI MITCHELL, BRAXTON D, TAYLOR, SIMEON I. · 2005 to 2019
$17.3M
JHU-UMD Diabetes Research CenterP30DK079637 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI AHIMA, REXFORD S. · 2013 to 2017
$9.7M
Research Training in Gastroenterology and HepatologyT32DK067872 · NIDDK · UNIVERSITY OF MARYLAND BALTIMORE · PI RAUFMAN, JEAN-PIERRE · 2005 to 2024
$7.2M
Genetic determinants of NAFLD severity and progressionR01DK091601 · NIDDK · TRANSLATIONAL GENOMICS RESEARCH INST · PI DISTEFANO, JOHANNA K, GERHARD, GLENN S · 2011 to 2015
$2.9M
Genetic Determinants of Weight Loss and Resolution of Co-MorbiditiesR01DK088231 · NIDDK · TEMPLE UNIV OF THE COMMONWEALTH · PI GERHARD, GLENN S · 2011 to 2015
$2.5M
Analysis of Fatty Liver in the Framingham Heart Study CohortK23DK080145 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SPELIOTES, ELIZABETH K · 2008 to 2012
$917k
Genetics of Bone Mineral Density in Two PopulationsF32AR059469 · NIAMS · UNIVERSITY OF MARYLAND BALTIMORE · PI YERGES-ARMSTRONG, LAURA MARIA · 2010 to 2011
$98k
Functional characterization of a novel gene for non-alcoholic fatty liver diseaseF32DK093267 · NIDDK · UNIVERSITY OF MARYLAND BALTIMORE · PI GORDEN, ALEXIS L · 2011 to 2011
$61k
NIAMS NIH HHS F32 AR059469NIAMS NIH HHS F32 AR59469NIDDK NIH HHS DK091601NIDDK NIH HHS F32 DK093267NIDDK NIH HHS K23 DK080145NIDDK NIH HHS P30 DK072488NIDDK NIH HHS P30 DK079637NIDDK NIH HHS R01 DK088231NIDDK NIH HHS R01 DK091601NIDDK NIH HHS T32 DK067872
6 · The paper itself

Abstract

objectiveObesity-associated non-alcoholic fatty liver disease (NAFLD) may cause liver dysfunction and failure. In a previously reported genome-wide association meta-analysis, single nucleotide polymorphisms (SNPs) near PNPLA3, NCAN, GCKR, LYPLAL1 and PPP1R3B were associated with NAFLD and with distinctive serum lipid profiles. The present study examined the relevance of these variants to NAFLD in extreme obesity.

methodsIn 1,092 bariatric surgery patients, the candidate SNPs were genotyped and association analyses with liver histology and serum lipids were performed.

resultsWe replicated the association of hepatosteatosis with PNPLA3 rs738409[G] and with NCAN rs2228603[T]. We also replicated the association of rs2228603[T] with hepatic inflammation and fibrosis. rs2228603[T] was associated with lower serum low-density lipoprotein, total cholesterol and triglycerides. After stratification by the presence or absence of NAFLD, these associations were present predominantly in the subgroup with NAFLD.

conclusionNCAN rs2228603[T] is a risk factor for liver inflammation and fibrosis, suggesting that this locus is responsible for progression from steatosis to steatohepatitis. In this bariatric cohort, rs2228603[T] was associated with low serum lipids only in patients with NAFLD. This supports a NAFLD model in which the liver may sequester triglycerides as a result of either increased triglyceride uptake and/or decreased lipolysis.

Indexed as

AdultCholesterolChondroitin Sulfate ProteoglycansFatty LiverFemaleGenetic VariationGenotypeHumansLectins, C-TypeLiver CirrhosisMaleMiddle AgedNerve Tissue ProteinsNeurocanNon-alcoholic Fatty Liver DiseaseObesity, MorbidCholesterolChondroitin Sulfate ProteoglycansLectins, C-TypeNCAN protein, humanNerve Tissue ProteinsNeurocanTriglycerides

Identifiers

PMID23594525
PMCPMC3864002
OpenAlexW2040471688

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.