Evidence map›Paper›PMID 23593306›Full record

ArticlePloS one2013

Identification of anziaic acid, a lichen depside from Hypotrachyna sp., as a new topoisomerase poison inhibitor.

Bokun Cheng, Shugeng Cao, Victor Vasquez, Thirunavukkarasu Annamalai, Giselle Tamayo-Castillo, Jon Clardy, Yuk-Ching Tse-Dinh

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
5.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 47 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
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  5. New Alkaloids From a Hawaiian Fungal StrainFrontiers in chemistry · 2021
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  6. Transcriptional Response ofFrontiers in microbiology · 2019
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Bokun ChengDepartment of Biochemistry and Molecular Biology, New York Medical College, Valhalla, New York, United States of America.
Shugeng Cao
Victor Vasquez
Thirunavukkarasu Annamalai
Giselle Tamayo-Castillo
Jon Clardy
Yuk-Ching Tse-Dinh
Harvard University · USNew York Medical College · USFlorida International University · USNational Biodiversity Institute · CRUniversidad de Costa Rica · CR

Funding

Treatments for Nipah Virus InfectionU54AI057159 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI KASPER, DENNIS L. · 2003 to 2013
$113.7M
of Natural Product based Drugs and Bioenergetic Materials from Costa Rican BiotaU01TW007404 · FIC · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SHERMAN, DAVID H · 2005 to 2013
$7.6M
Bacterial cell killing topoisomerase I--DNA lesionR01AI069313 · NIAID · NEW YORK MEDICAL COLLEGE · PI TSE-DINH, YUK-CHING · 2006 to 2014
$3.4M
HTS assay development targeting Yersinia pestis topoisomerase IR21NS067592 · NINDS · NEW YORK MEDICAL COLLEGE · PI TSE-DINH, YUK-CHING · 2010 to 2011
$199k
FIC NIH HHS U01 TW007404NIAID NIH HHS AI057159NIAID NIH HHS R01 AI069313NIAID NIH HHS U54 AI057159NINDS NIH HHS R21 NS067592
6 · The paper itself

Abstract

Topoisomerase inhibitors are effective for antibacterial and anticancer therapy because they can lead to the accumulation of the intermediate DNA cleavage complex formed by the topoisomerase enzymes, which trigger cell death. Here we report the application of a novel enzyme-based high-throughput screening assay to identify natural product extracts that can lead to increased accumulation of the DNA cleavage complex formed by recombinant Yersinia pestis topoisomerase I as part of a larger effort to identify new antibacterial compounds. Further characterization and fractionation of the screening positives from the primary assay led to the discovery of a depside, anziaic acid, from the lichen Hypotrachyna sp. as an inhibitor for both Y. pestis and Escherichia coli topoisomerase I. In in vitro assays, anziaic acid exhibits antibacterial activity against Bacillus subtilis and a membrane permeable strain of E. coli. Anziaic acid was also found to act as an inhibitor of human topoisomerase II but had little effect on human topoisomerase I. This is the first report of a depside with activity as a topoisomerase poison inhibitor and demonstrates the potential of this class of natural products as a source for new antibacterial and anticancer compounds.

Indexed as

Anti-Bacterial AgentsAscomycotaBiological ProductsCell SurvivalDepsidesDetergentsDNA Topoisomerases, Type IDose-Response Relationship, DrugDrug Evaluation, PreclinicalEscherichia coliHigh-Throughput Screening AssaysHumansHydroxybenzoatesMagnesiumSmall Molecule LibrariesTopoisomerase InhibitorsAnti-Bacterial Agentsanziaic acidBiological ProductsDepsidesDetergentsDNA Topoisomerases, Type IHydroxybenzoatesMagnesiumSmall Molecule LibrariesTopoisomerase Inhibitors

Identifiers

PMID23593306
PMCPMC3620467
OpenAlexW1990276380

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.