Evidence map›Paper›PMID 23593293›Full record

ArticlePloS one2013

Klebsiella phage vB_KleM-RaK2 - a giant singleton virus of the family Myoviridae.

Eugenijus Simoliūnas, Laura Kaliniene, Lidija Truncaitė, Aurelija Zajančkauskaitė, Juozas Staniulis, Algirdas Kaupinis, Marija Ger, Mindaugas Valius, Rolandas Meškys

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
3.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
  2. Article
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  4. Molecular Aspects of the Functioning of Pathogenic Bacteria Biofilm Based onInternational journal of molecular sciences · 2024
    Review
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  6. Characterization ofInternational journal of molecular sciences · 2023
    Article
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  8. Viruses · 2023
    Article
  9. Article
  10. Insights into theInternational journal of molecular sciences · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. International journal of molecular sciences · 2021
    Article
  17. Microorganisms · 2021
    Article
  18. Review
  19. Article
  20. Characterisation of Bacteriophage-Encoded Depolymerases Selective for KeyFrontiers in cellular and infection microbiology · 2021
    Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Eugenijus SimoliūnasDepartment of Molecular Microbiology and Biotechnology, Institute of Biochemistry, Vilnius University, Vilnius, Lithuania.
Laura Kaliniene
Lidija Truncaitė
Aurelija Zajančkauskaitė
Juozas Staniulis
Algirdas Kaupinis
Marija Ger
Mindaugas Valius
Rolandas Meškys
Vilnius University · LTNature Research Centre · LT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

At 346 kbp in size, the genome of a jumbo bacteriophage vB_KleM-RaK2 (RaK2) is the largest Klebsiella infecting myovirus genome sequenced to date. In total, 272 out of 534 RaK2 ORFs lack detectable database homologues. Based on the similarity to biologically defined proteins and/or MS/MS analysis, 117 of RaK2 ORFs were given a functional annotation, including 28 RaK2 ORFs coding for structural proteins that have no reliable homologues to annotated structural proteins in other organisms. The electron micrographs revealed elaborate spike-like structures on the tail fibers of Rak2, suggesting that this phage is an atypical myovirus. While head and tail proteins of RaK2 are mostly myoviridae-related, the bioinformatics analysis indicate that tail fibers/spikes of this phage are formed from podovirus-like peptides predominantly. Overall, these results provide evidence that bacteriophage RaK2 differs profoundly from previously studied viruses of the Myoviridae family.

Indexed as

BacteriolysisGene OrderGenome, ViralHost-Pathogen InteractionsKlebsiellaMolecular Sequence DataMyoviridaeNucleotidesOpen Reading FramesRNA, TransferViral ProteinsViral TropismVirionVirus ReplicationNucleotidesRNA, TransferViral Proteins

Identifiers

PMID23593293
PMCPMC3622015
OpenAlexW2045330507

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.