Evidence map›Paper›PMID 23593234›Full record

ArticlePloS one2013

A dual read-out assay to evaluate the potency of compounds active against Mycobacterium tuberculosis.

Juliane Ollinger, Mai Ann Bailey, Garrett C Moraski, Allen Casey, Stephanie Florio, Torey Alling, Marvin J Miller, Tanya Parish

Abstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed.

  1. Article
  2. Thienopyrimidine amide analogs target MmpL3 inAntimicrobial agents and chemotherapy · 2025
    Article
  3. Article
  4. New Triazolopyrimidines with Improved Activity againstACS medicinal chemistry letters · 2025
    Article
  5. Deep learning-driven bacterial cytological profiling to determine antimicrobial mechanisms inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. An arylsulfonamide that targets cell wall biosynthesis inAntimicrobial agents and chemotherapy · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Inoculum-dependent bactericidal activity of aMicrobiology (Reading, England) · 2023
    Article
  11. Deletion of Rv2571c confers resistance to arylamide compounds inAntimicrobial agents and chemotherapy · 2023
    Article
  12. Inoculum-dependent bactericidal activity of abioRxiv : the preprint server for biology · 2023
    Article
  13. Article
  14. Microbiology spectrum · 2022
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Juliane OllingerInfectious Disease Research Institute, Seattle, Washington, United States of America.
Mai Ann Bailey
Garrett C Moraski
Allen Casey
Stephanie Florio
Torey Alling
Marvin J Miller
Tanya Parish

Funding

Design/Syntheses/Studies/Novel Antituberculosis AgentsR01AI054193 · NIAID · UNIVERSITY OF NOTRE DAME · PI MILLER, MARVIN J · 2004 to 2014
$3.2M
NIAID NIH HHS R01 AI054193
6 · The paper itself

Abstract

Tuberculosis is a serious global health problem caused by the bacterium Mycobacterium tuberculosis. There is an urgent need for discovery and development of new treatments, but this can only be accomplished through rapid and reproducible M. tuberculosis assays designed to identify potent inhibitors. We developed an automated 96-well assay utilizing a recombinant strain of M. tuberculosis expressing a far-red fluorescent reporter to determine the activity of novel compounds; this allowed us to measure growth by monitoring both optical density and fluorescence. We determined that optical density and fluorescence were correlated with cell number during logarithmic phase growth. Fluorescence was stably maintained without antibiotic selection over 5 days, during which time cells remained actively growing. We optimized parameters for the assay, with the final format being 5 days' growth in 96-well plates in the presence of 2% w/v DMSO. We confirmed reproducibility using rifampicin and other antibiotics. The dual detection method allows for a reproducible calculation of the minimum inhibitory concentration (MIC), at the same time detecting artefacts such as fluorescence quenching or compound precipitation. We used our assay to confirm anti-tubercular activity and establish the structure activity relationship (SAR) around the imidazo[1,2-a]pyridine-3-carboxamides, a promising series of M. tuberculosis inhibitors.

Indexed as

Antitubercular AgentsGene Expression Regulation, BacterialGenes, ReporterMicrobial Sensitivity TestsMycobacterium tuberculosisReproducibility of ResultsSpectrometry, FluorescenceAntitubercular Agents

Identifiers

PMID23593234
PMCPMC3617142

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.