Evidence map›Paper›PMID 23592795›Full record

ArticleGenes & development2013

SFMBT1 functions with LSD1 to regulate expression of canonical histone genes and chromatin-related factors.

Jin Zhang, Roberto Bonasio, Francesco Strino, Yuval Kluger, J Kim Holloway, Andrew J Modzelewski, Paula E Cohen, Danny Reinberg

Registry-linked trialOpen access · diamondAbstract read
In one paragraph

Article in Genes & development, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06857136 (The Role of the Glymphatic System Avaluated Thourgh mr Imaging in the Diagnosis and Management of NPH), which is not on this map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06857136 completednot on this mapstarted 2021, after this paper: background citation

The Role of the Glymphatic System Avaluated Thourgh mr Imaging in the Diagnosis and Management of NPH

TypeobservationalSponsorFondazione I.R.C.C.S. Istituto Neurologico Carlo BestaRan2021 to 2024Enrolled29ConditionsHydrocephalus, Normal Pressure Hydrocephalus
3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 80 citations in OpenAlex.

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  16. A de novoCold Spring Harbor molecular case studies · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Jin ZhangHoward Hughes Medical Institute, Department of Biochemistry, New York University School of Medicine, New York, New York 10016, USA.
Roberto Bonasio
Francesco Strino
Yuval Kluger
J Kim Holloway
Andrew J Modzelewski
Paula E Cohen
Danny Reinberg
Cornell University · USNew York University · USYale University · US

Funding

Transcription Regulation by NC2R01GM064844 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI REINBERG, DANNY · 2002 to 2014
$3.3M
Reproductive Sciences and Genomics Training ProgramT32HD052471 · NICHD · CORNELL UNIVERSITY · PI ROBERSON, MARK S · 2007 to 2016
$2.0M
Genetic Pathways Effecting Crossover Control and Meiotic Recombination in MammalsR01GM097263 · NIGMS · CORNELL UNIVERSITY · PI COHEN, PAULA ELAINE · 2012 to 2015
$1.1M
Howard Hughes Medical InstituteNICHD NIH HHS T32 HD052471NIGMS NIH HHS GM-64844NIGMS NIH HHS R01 GM064844NIGMS NIH HHS R01 GM097263PHS HHS R37-37120
6 · The paper itself

Abstract

SFMBT1 (Scm [Sex comb on midleg] with four MBT [malignant brain tumor] domains 1) is a poorly characterized mammalian MBT domain-containing protein homologous to Drosophila SFMBT, a Polycomb group protein involved in epigenetic regulation of gene expression. Here, we show that SFMBT1 regulates transcription in somatic cells and during spermatogenesis through the formation of a stable complex with LSD1 and CoREST. When bound to its gene targets, SFMBT1 recruits its associated proteins and causes chromatin compaction and transcriptional repression. SFMBT1, LSD1, and CoREST share a large fraction of target genes, including those encoding replication-dependent histones. Simultaneous occupancy of histone genes by SFMBT1, LSD1, and CoREST is regulated during the cell cycle and correlates with the loss of RNA polymerase II at these promoters during G2, M, and G1. The interplay between the repressive SFMBT1-LSD1-CoREST complex and RNA polymerase II contributes to the timely transcriptional regulation of histone genes in human cells. SFMBT1, LSD1, and CoREST also form a stable complex in germ cells, and their chromatin binding activity is regulated during spermatogenesis.

Indexed as

Gene Expression RegulationHistonesAnimalsChromatinCo-Repressor ProteinsGenomeHEK293 CellsHeLa CellsHistone DemethylasesHumansMaleMiceMice, Inbred C57BLNerve Tissue ProteinsOxidoreductases, N-DemethylatingProtein BindingChromatinCo-Repressor ProteinsHistone DemethylasesHistonesKDM1A protein, humanKDM1a protein, mouseNerve Tissue ProteinsOxidoreductases, N-DemethylatingRCOR1 protein, humanRepressor ProteinsSFMBT1 protein, humanSfmbt1 protein, mouse

Identifiers

PMID23592795
PMCPMC3639416
OpenAlexW2134987326

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.