Evidence map›Paper›PMID 23591992›Full record

ArticleHuman molecular genetics2013

ALDH1A3 loss of function causes bilateral anophthalmia/microphthalmia and hypoplasia of the optic nerve and optic chiasm.

Mani Yahyavi, Hana Abouzeid, Ghada Gawdat, Anne-Sophie de Preux, Tong Xiao, Tanya Bardakjian, Adele Schneider, Alex Choi, Eric Jorgenson, Herwig Baier and 3 more

Open access · bronzeAbstract readCase Reports
In one paragraph

Article in Human molecular genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 76 citations in OpenAlex.

  1. Article
  2. Article
  3. Observational
  4. Vitamin A supply in the eye and establishment of the visual cycle.Current topics in developmental biology · 2025
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  5. Protein truncating splice site variant inInternational journal of ophthalmology · 2025
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  13. Role of carotenoids and retinoids during heart development.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2020
    Review
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Mani YahyaviDivision of Genetics, Department of Pediatrics, University of California, San Francisco, San Francisco, CA 94143-0748, USA.
Hana Abouzeid
Ghada Gawdat
Anne-Sophie de Preux
Tong Xiao
Tanya Bardakjian
Adele Schneider
Alex Choi
Eric Jorgenson
Herwig Baier
Mohamad El Sada
Daniel F Schorderet
Anne M Slavotinek
Pediatrics and Genetics · USUniversity of California, San Francisco · USEinstein Medical Center Philadelphia · USÉcole Polytechnique Fédérale de Lausanne · CHKaiser Permanente · USUniversity of Lausanne · CH

Funding

Molecular Genetic Analysis of Congenital Diaphragmatic HerniaK08HD053476 · NICHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SLAVOTINEK, ANNE M. · 2007 to 2011
$625k
Anopthalmia Spectrum DisordersR21EY019999 · NEI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SLAVOTINEK, ANNE M. · 2010 to 2011
$417k
NEI NIH HHS R21 EY019999NEI NIH HHS R21 EY019999-01NICHD NIH HHS K08 HD053476NICHD NIH HHS K08 HD053476-01A1
6 · The paper itself

Abstract

The major active retinoid, all-trans retinoic acid, has long been recognized as critical for the development of several organs, including the eye. Mutations in STRA6, the gene encoding the cellular receptor for vitamin A, in patients with Matthew-Wood syndrome and anophthalmia/microphthalmia (A/M), have previously demonstrated the importance of retinol metabolism in human eye disease. We used homozygosity mapping combined with next-generation sequencing to interrogate patients with anophthalmia and microphthalmia for new causative genes. We used whole-exome and whole-genome sequencing to study a family with two affected brothers with bilateral A/M and a simplex case with bilateral anophthalmia and hypoplasia of the optic nerve and optic chiasm. Analysis of novel sequence variants revealed homozygosity for two nonsense mutations in ALDH1A3, c.568A>G, predicting p.Lys190*, in the familial cases, and c.1165A>T, predicting p.Lys389*, in the simplex case. Both mutations predict nonsense-mediated decay and complete loss of function. We performed antisense morpholino (MO) studies in Danio rerio to characterize the developmental effects of loss of Aldh1a3 function. MO-injected larvae showed a significant reduction in eye size, and aberrant axonal projections to the tectum were noted. We conclude that ALDH1A3 loss of function causes anophthalmia and aberrant eye development in humans and in animal model systems.

Indexed as

Aldehyde OxidoreductasesAnimalsAnophthalmosChildChild, PreschoolCodon, NonsenseExomeEyeFemaleGenomeHomozygoteHumansInfantLarvaMaleMicrophthalmosaldehyde dehydrogenase (NAD(P)+)Aldehyde OxidoreductasesCodon, Nonsense

Identifiers

PMID23591992
PMCPMC3723310
OpenAlexW2136869125

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.