Evidence map›Paper›PMID 23589870›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

A strategy to capture and characterize the synaptic transcriptome.

Sathyanarayanan V Puthanveettil, Igor Antonov, Sergey Kalachikov, Priyamvada Rajasethupathy, Yun-Beom Choi, Andrea B Kohn, Mathew Citarella, Fahong Yu, Kevin A Karl, Maxime Kinet and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
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  5. Endogenous l- to d-amino acid residue isomerization modulates selectivity between distinct neuropeptide receptor family members.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  6. Article
  7. Axonal transport deficits in neuropsychiatric disorders.Molecular and cellular neurosciences · 2022
    Article
  8. The evolution of synaptic and cognitive capacity: Insights from the nervous system transcriptome ofProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Article
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  11. Review
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  13. Article
  14. Neural versus alternative integrative systems: molecular insights into origins of neurotransmitters.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Review
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 1 country.

Sathyanarayanan V PuthanveettilDepartment of Neuroscience and Howard Hughes Medical Institute, Columbia University, New York, NY 10027, USA. sputhanv@scripps.edu
Igor Antonov
Sergey Kalachikov
Priyamvada Rajasethupathy
Yun-Beom Choi
Andrea B Kohn
Mathew Citarella
Fahong Yu
Kevin A Karl
Maxime Kinet
Irina Morozova
James J Russo
Jingyue Ju
Leonid L Moroz
Eric R Kandel
Columbia University · USHoward Hughes Medical Institute · USUniversity of Florida · USNew York Genome Center · USWhitney Museum of American Art · US

Funding

Genomic Approaches to Neuronal Diversity and PlasticityP50HG002806 · NHGRI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI JU, JINGYUE · 2003 to 2007
$13.9M
Gene Expression Analysis of Aplysia Neural NetworkR01MH075026 · NIMH · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI JU, JINGYUE · 2005 to 2009
$2.9M
Molecular Engineering Approach to Study Long Term Synaptic PlasticityR01NS060762 · NINDS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI JU, JINGYUE · 2008 to 2011
$2.3M
Genomic Approaches to Deciphering Memory CircuitsR01MH097062 · NIMH · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI JU, JINGYUE, KANDEL, ERIC R · 2012 to 2016
$2.0M
Genomic Bases of Behavioral Learning: Single Cell ApproachesR01GM097502 · NIGMS · UNIVERSITY OF FLORIDA · PI HAWKINS, ROBERT D, MOROZ, LEONID L · 2011 to 2014
$1.6M
Molecular Substrates of Translation at the SynapseR21MH096258 · NIMH · SCRIPPS FLORIDA · PI PUTHANVEETTIL, SATHYA · 2012 to 2013
$531k
Genomic Dissection of Circuit DynamicsR21RR025699 · NCRR · UNIVERSITY OF FLORIDA · PI BUCHER, DIRK MARTIN, MOROZ, LEONID L · 2009 to 2010
$408k
Spatial Organization of the Genome in Identified Neurons of Memory CircuitsR21DA030118 · NIDA · UNIVERSITY OF FLORIDA · PI MOROZ, LEONID L · 2010 to 2011
$350k
Howard Hughes Medical InstituteNCRR NIH HHS R21 RR025699NCRR NIH HHS R21RR025699NHGRI NIH HHS P50 HG002806NIDA NIH HHS 5R21DA030118NIDA NIH HHS R21 DA030118NIGMS NIH HHS 1R01 GM097502NIGMS NIH HHS R01 GM097502NIMH NIH HHS MH075026NIMH NIH HHS R01 MH075026NIMH NIH HHS R01 MH097062NIMH NIH HHS R21 MH096258NINDS NIH HHS 1R01 NS060762NINDS NIH HHS R01 NS060762
6 · The paper itself

Abstract

Here we describe a strategy designed to identify RNAs that are actively transported to synapses during learning. Our approach is based on the characterization of RNA transport complexes carried by molecular motor kinesin. Using this strategy in Aplysia, we have identified 5,657 unique sequences consisting of both coding and noncoding RNAs from the CNS. Several of these RNAs have key roles in the maintenance of synaptic function and growth. One of these RNAs, myosin heavy chain, is critical in presynaptic sensory neurons for the establishment of long-term facilitation, but not for its persistence.

Indexed as

AnimalsAplysiaCentral Nervous SystemGene Expression ProfilingGenomeHigh-Throughput Nucleotide SequencingIn Situ HybridizationKinesinsLong-Term PotentiationMyosin Heavy ChainsNeuronsOligonucleotide Array Sequence AnalysisProtein TransportRNARNA TransportSequence Analysis, RNAKinesinsMyosin Heavy ChainsRNA

Identifiers

PMID23589870
PMCPMC3645558
OpenAlexW2147565100

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.