Evidence map›Paper›PMID 23589360›Full record

ArticleGenome biology and evolution2013

Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26.

Jérémy Andres, Florence Arsène-Ploetze, Valérie Barbe, Céline Brochier-Armanet, Jessica Cleiss-Arnold, Jean-Yves Coppée, Marie-Agnès Dillies, Lucie Geist, Aurélie Joublin, Sandrine Koechler and 13 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
10.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 69 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Biotic and Abiotic Factors Influencing Arsenic Biogeochemistry and Toxicity in Fluvial Ecosystems: A Review.International journal of environmental research and public health · 2020
    Review
  8. Review
  9. Article
  10. The complete chloroplast genome sequence ofMitochondrial DNA. Part B, Resources · 2019
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. The Composite 259-kb Plasmid ofFrontiers in microbiology · 2017
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 5 institutions in 3 countries.

Jérémy AndresLaboratoire Génétique Moléculaire, Génomique et Microbiologie, UMR7156 CNRS Université de Strasbourg, Strasbourg, France.
Florence Arsène-Ploetze
Valérie Barbe
Céline Brochier-Armanet
Jessica Cleiss-Arnold
Jean-Yves Coppée
Marie-Agnès Dillies
Lucie Geist
Aurélie Joublin
Sandrine Koechler
Florent Lassalle
Marie Marchal
Claudine Médigue
Daniel Muller
Xavier Nesme
Frédéric Plewniak
Caroline Proux
Martha Helena Ramírez-Bahena
Chantal Schenowitz
Odile Sismeiro
David Vallenet
Joanne M Santini
Philippe N Bertin
Centre National de la Recherche Scientifique · FRUniversité Claude Bernard Lyon 1 · FRCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRInstitut Pasteur · FRInstitute of Structural and Molecular Biology · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Arsenic is widespread in the environment and its presence is a result of natural or anthropogenic activities. Microbes have developed different mechanisms to deal with toxic compounds such as arsenic and this is to resist or metabolize the compound. Here, we present the first reference set of genomic, transcriptomic and proteomic data of an Alphaproteobacterium isolated from an arsenic-containing goldmine: Rhizobium sp. NT-26. Although phylogenetically related to the plant-associated bacteria, this organism has lost the major colonizing capabilities needed for symbiosis with legumes. In contrast, the genome of Rhizobium sp. NT-26 comprises a megaplasmid containing the various genes, which enable it to metabolize arsenite. Remarkably, although the genes required for arsenite oxidation and flagellar motility/biofilm formation are carried by the megaplasmid and the chromosome, respectively, a coordinate regulation of these two mechanisms was observed. Taken together, these processes illustrate the impact environmental pressure can have on the evolution of bacterial genomes, improving the fitness of bacterial strains by the acquisition of novel functions.

Indexed as

BacteriaGenome, BacterialRhizobiumArsenitesAutotrophic ProcessesBiofilmsGenetic FitnessGoldOxidation-ReductionPhylogenySymbiosisarseniteArsenitesGoldarsenic metabolismmotility/biofilmphylogenyRhizobium/Agrobacteriumrhizospheretranscriptomics/proteomics

Identifiers

PMID23589360
PMCPMC3673622
OpenAlexW2110344417

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.