Evidence map›Paper›PMID 23589309›Full record

ArticleThe Journal of biological chemistry2013

Substrate selectivity of the acid-activated glutamate/γ-aminobutyric acid (GABA) antiporter GadC from Escherichia coli.

Dan Ma, Peilong Lu, Yigong Shi

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Multitier regulation of theJournal of bacteriology · 2024
    Article
  5. Article
  6. Article
  7. Review
  8. Integrated AlphaFold2 and DEER investigation of the conformational dynamics of a pH-dependent APC antiporter.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Cysteine protected cells from HWorld journal of microbiology & biotechnology · 2022
    Article
  10. Article
  11. How the PhoP/PhoQ System Controls Virulence and MgMicrobiology and molecular biology reviews : MMBR · 2021
    Review
  12. Article
  13. Review
  14. Genes · 2020
    Article
  15. Function and Regulation of Acid Resistance Antiporters.The Journal of membrane biology · 2019
    Article
  16. Article
  17. Article
  18. TheAIMS microbiology · 2017
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Dan MaMinistry of Education Protein Science Laboratory and the Joint Center for Life Sciences, Center for Structural Biology, Schools of Life Sciences and Medicine, Tsinghua University, Beijing 100084, China.
Peilong Lu
Yigong Shi
Center for Life Sciences · CNTsinghua University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

GadC, a central component of the Escherichia coli acid resistance system, is a Glu/GABA antiporter. A previous structural study and biochemical characterization showed that GadC exhibits a stringent pH dependence for substrate transport, with no detectable activity at pH values above 6.5. However, the substrate selectivity and the mechanism of pH-dependent transport activity of GadC remain enigmatic. In this study, we demonstrate that GadC selectively transports Glu with no net charge and GABA with a positive charge. A C-plug-truncated variant of GadC (residues 1-470) transported Gln (a mimic of Glu with no net charge), but not Glu, even at pH 8.0. The pH-dependent transport of Gln by this GadC variant was shifted ~1 unit toward a higher pH compared with Glu transport. Taken together, the results identify the substrate selectivity for GadC and show that the protonation states of substrates are crucial for transport.

Indexed as

Biological Transport, ActiveEscherichia coliEscherichia coli ProteinsGlutamineHydrogen-Ion ConcentrationMembrane ProteinsSubstrate SpecificityEscherichia coli ProteinsGadC protein, E coliGlutamineMembrane ProteinsAcid ResistanceAmino Acid TransportGadCGlutamateGlutamineMembrane AntiporterMembrane ProteinsMembrane Transporter ReconstitutionProtonation/DeprotonationSubstrate Selectivity

Identifiers

PMID23589309
PMCPMC3663535
OpenAlexW2081038209

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.