Evidence map›Paper›PMID 23589299›Full record

ArticleThe Journal of biological chemistry2013

High error rates in selenocysteine insertion in mammalian cells treated with the antibiotic doxycycline, chloramphenicol, or geneticin.

Ryuta Tobe, Salvador Naranjo-Suarez, Robert A Everley, Bradley A Carlson, Anton A Turanov, Petra A Tsuji, Min-Hyuk Yoo, Steven P Gygi, Vadim N Gladyshev, Dolph L Hatfield

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
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  7. Review
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  9. Review
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  13. Article
  14. The utilization of selenocysteine-tRNATranslation (Austin, Tex.) · 2017
    Article
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Ryuta TobeMolecular Biology of Selenium Section, Laboratory of Cancer Prevention, Center for Cancer Research, NCI, National Institutes of Health, Bethesda, Maryland 20892, USA.
Salvador Naranjo-Suarez
Robert A Everley
Bradley A Carlson
Anton A Turanov
Petra A Tsuji
Min-Hyuk Yoo
Steven P Gygi
Vadim N Gladyshev
Dolph L Hatfield
Harvard University · USCenter for Cancer Research · USNational Institutes of Health · USBrigham and Women's Hospital · USTowson University · US

Funding

Selenoproteins as Targets for Cancer PreventionR01CA080946 · NCI · UNIVERSITY OF NEBRASKA LINCOLN · PI GLADYSHEV, VADIM N. · 2001 to 2018
$4.5M
IDENTITY OF TERMINATOR AND SELENOCYSTEINE UGA CODONSR01GM061603 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI GLADYSHEV, VADIM N. · 2000 to 2016
$4.0M
Functions of thioredoxin reductases and their targetsR37GM065204 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI GLADYSHEV, VADIM N. · 2011 to 2020
$4.0M
Functions of Mammalian Thioredoxin ReductasesR01GM065204 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI GLADYSHEV, VADIM N. · 2002 to 2009
$2.2M
Biosynthesis of Selenocysteine and Its Incorporation into ProteinZIABC010767 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI HATFIELD, DOLPH · 2009 to 2014
$2.0M
NCI NIH HHS CA080946NCI NIH HHS R01 CA080946NIGMS NIH HHS GM065204NIGMS NIH HHS R01 GM061603NIGMS NIH HHS R01 GM065204NIGMS NIH HHS R37 GM065204
6 · The paper itself

Abstract

Antibiotics target bacteria by interfering with essential processes such as translation, but their effects on translation in mammalian cells are less well characterized. We found that doxycycline, chloramphenicol, and Geneticin (G418) interfered with insertion of selenocysteine (Sec), which is encoded by the stop codon, UGA, into selenoproteins in murine EMT6 cells. Treatment of EMT6 cells with these antibiotics reduced enzymatic activities and Sec insertion into thioredoxin reductase 1 (TR1) and glutathione peroxidase 1 (GPx1). However, these proteins were differentially affected due to varying errors in Sec insertion at UGA. In the presence of doxycycline, chloramphenicol, or G418, the Sec-containing form of TR1 decreased, whereas the arginine-containing and truncated forms of this protein increased. We also detected antibiotic-specific misinsertion of cysteine and tryptophan. Furthermore, misinsertion of arginine in place of Sec was commonly observed in GPx1 and glutathione peroxidase 4. TR1 was the most affected and GPx1 was the least affected by these translation errors. These observations were consistent with the differential use of two Sec tRNA isoforms and their distinct roles in supporting accuracy of Sec insertion into selenoproteins. The data reveal widespread errors in inserting Sec into proteins and in dysregulation of selenoprotein expression and function upon antibiotic treatment.

Indexed as

AmebicidesAmino Acid SubstitutionAnimalsAnti-Bacterial AgentsArginineCell Line, TumorChloramphenicolDoxycyclineGentamicinsGlutathione PeroxidaseGlutathione Peroxidase GPX1HumansMicePhospholipid Hydroperoxide Glutathione PeroxidaseRNA, Transfer, Amino Acid-SpecificSelenocysteineAmebicidesAnti-Bacterial Agentsantibiotic G 418ArginineChloramphenicolDoxycyclineGentamicinsGlutathione PeroxidaseGlutathione Peroxidase GPX1Phospholipid Hydroperoxide Glutathione PeroxidaseRNA, Transfer, Amino Acid-SpecificSelenocysteineSelenoproteinsThioredoxinstRNA, selenocysteine-Txn1 protein, mouseMisreadingProtein SynthesisSelenocysteineSelenoproteinTransfer RNA (tRNA)TranslationUGA Codon

Identifiers

PMID23589299
PMCPMC3663496
OpenAlexW1984124563

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.