Evidence map›Paper›PMID 23587058›Full record

ArticleGigaScience2012

The sequence and analysis of a Chinese pig genome.

Xiaodong Fang, Yulian Mou, Zhiyong Huang, Yong Li, Lijuan Han, Yanfeng Zhang, Yue Feng, Yuanxin Chen, Xuanting Jiang, Wei Zhao and 22 more

Open access · goldAbstract read
In one paragraph

Article in GigaScience, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed
9.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed, 159 citations in OpenAlex.

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  18. Pig pangenome graph reveals functional features of non-reference sequences.Journal of animal science and biotechnology · 2024
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  20. Review

24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 6 institutions in 2 countries.

Xiaodong FangBGI-Shenzhen, Bei Shan Road, Yantian, Shenzhen, 518083, China. Fst508@sina.com.
Yulian Mou
Zhiyong Huang
Yong Li
Lijuan Han
Yanfeng Zhang
Yue Feng
Yuanxin Chen
Xuanting Jiang
Wei Zhao
Xiaoqing Sun
Zhiqiang Xiong
Lan Yang
Huan Liu
Dingding Fan
Likai Mao
Lijie Ren
Chuxin Liu
Juan Wang
Kui Li
Guangbiao Wang
Shulin Yang
Liangxue Lai
Guojie Zhang
Yingrui Li
Jun Wang
Lars Bolund
Huanming Yang
Jian Wang
Shutang Feng
Songgang Li
Yutao Du
BGI Group (China) · CNInstitute of Animal Sciences · CNBeike Biotechnology (China) · CNChinese Academy of Sciences · CNGuangzhou Institutes of Biomedicine and Health · CNShenzhen Second People's Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe pig is an economically important food source, amounting to approximately 40% of all meat consumed worldwide. Pigs also serve as an important model organism because of their similarity to humans at the anatomical, physiological and genetic level, making them very useful for studying a variety of human diseases. A pig strain of particular interest is the miniature pig, specifically the Wuzhishan pig (WZSP), as it has been extensively inbred. Its high level of homozygosity offers increased ease for selective breeding for specific traits and a more straightforward understanding of the genetic changes that underlie its biological characteristics. WZSP also serves as a promising means for applications in surgery, tissue engineering, and xenotransplantation. Here, we report the sequencing and analysis of an inbreeding WZSP genome.

resultsOur results reveal some unique genomic features, including a relatively high level of homozygosity in the diploid genome, an unusual distribution of heterozygosity, an over-representation of tRNA-derived transposable elements, a small amount of porcine endogenous retrovirus, and a lack of type C retroviruses. In addition, we carried out systematic research on gene evolution, together with a detailed investigation of the counterparts of human drug target genes.

conclusionOur results provide the opportunity to more clearly define the genomic character of pig, which could enhance our ability to create more useful pig models.

Identifiers

PMID23587058
PMCPMC3626506
OpenAlexW2170581254

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.