Evidence map›Paper›PMID 23586486›Full record

ArticleJournal of neurochemistry2013

A HuD-ZBP1 ribonucleoprotein complex localizes GAP-43 mRNA into axons through its 3' untranslated region AU-rich regulatory element.

Soonmoon Yoo, Hak H Kim, Paul Kim, Christopher J Donnelly, Ashley L Kalinski, Deepika Vuppalanchi, Michael Park, Seung J Lee, Tanuja T Merianda, Nora I Perrone-Bizzozero and 1 more

Abstract read
In one paragraph

Article in Journal of neurochemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 81 citations in OpenAlex.

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  8. From form to function: mAdvances in biological regulation · 2023
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  13. Axonal mRNA localization and translation: local events with broad roles.Cellular and molecular life sciences : CMLS · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Soonmoon YooNemours Biomedical Research, Alfred I. duPont Hosp. for Children, Wilmington, Delaware, USA. yoo@medsci.udel.edu
Hak H Kim
Paul Kim
Christopher J Donnelly
Ashley L Kalinski
Deepika Vuppalanchi
Michael Park
Seung J Lee
Tanuja T Merianda
Nora I Perrone-Bizzozero
Jeffery L Twiss
Drexel University · USAlfred I. duPont Hospital for Children · USUniversity of Delaware · USUniversity of New Mexico · USWilmington University · US

Funding

Center for Pediatric ResearchP20GM103464 · NIGMS · NEMOURS CHILDREN'S HOSPITAL, DELAWARE · PI SHAFFER, THOMAS H · 2012 to 2014
$5.6M
Translation during Nerve RegenerationR01NS041596 · NINDS · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI TWISS, JEFFERY L · 2001 to 2018
$4.0M
Mechanisms of Post-Transcriptional Control of Neuronal mRNAsR01NS030255 · NINDS · UNIVERSITY OF NEW MEXICO · PI PERRONE-BIZZOZERO, NORA IRMA · 1997 to 2011
$2.8M
NIGMS NIH HHS P20 GM103464NIGMS NIH HHS P20GM103464NINDS NIH HHS R01 NS030255NINDS NIH HHS R01 NS041596NINDS NIH HHS R01NS30255NINDS NIH HHS R01NS41596
6 · The paper itself

Abstract

Localized translation of axonal mRNAs contributes to developmental and regenerative axon growth. Although untranslated regions (UTRs) of many different axonal mRNAs appear to drive their localization, there has been no consensus RNA structure responsible for this localization. We recently showed that limited expression of ZBP1 protein restricts axonal localization of both β-actin and GAP-43 mRNAs. β-actin 3'UTR has a defined element for interaction with ZBP1, but GAP-43 mRNA shows no homology to this RNA sequence. Here, we show that an AU-rich regulatory element (ARE) in GAP-43's 3'UTR is necessary and sufficient for its axonal localization. Axonal GAP-43 mRNA levels increase after in vivo injury, and GAP-43 mRNA shows an increased half-life in regenerating axons. GAP-43 mRNA interacts with both HuD and ZBP1, and HuD and ZBP1 co-immunoprecipitate in an RNA-dependent fashion. Reporter mRNA with the GAP-43 ARE competes with endogenous β-actin mRNA for axonal localization and decreases axon length and branching similar to the β-actin 3'UTR competing with endogenous GAP-43 mRNA. Conversely, over-expressing GAP-43 coding sequence with its 3'UTR ARE increases axonal elongation and this effect is lost when just the ARE is deleted from GAP-43's 3'UTR. We have recently found that over-expression of GAP-43 using an axonally targeted construct with the 3'UTRs of GAP-43 promoted elongating growth of axons, while restricting the mRNA to the cell body with the 3'UTR of γ-actin had minimal effect on axon length. In this study, we show that the ARE in GAP-43's 3'UTR is responsible for localization of GAP-43 mRNA into axons and is sufficient for GAP-43 protein's role in elongating axonal growth.

Indexed as

3' Untranslated RegionsActinsAnimalsAU Rich ElementsAxonsCells, CulturedDNAFluorescence Recovery After PhotobleachingGanglia, SpinalGAP-43 ProteinImmunoprecipitationIn Situ Hybridization, FluorescenceMaleRatsRats, Sprague-DawleyRegulatory Elements, Transcriptional3' Untranslated RegionsActinsDNAGAP-43 ProteinIgf2bp1 protein, ratRNARNA-Binding ProteinsRNA, Messengeraxon regenerationGAP-43HuDmRNA transportRNA-immunoprecipitationZBP1

Identifiers

PMID23586486
PMCPMC3766383
OpenAlexW2036917322

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.