Evidence map›Paper›PMID 23585730›Full record

ArticleArchaea (Vancouver, B.C.)2013

PH1: an archaeovirus of Haloarcula hispanica related to SH1 and HHIV-2.

Kate Porter, Sen-Lin Tang, Chung-Pin Chen, Pei-Wen Chiang, Mei-Jhu Hong, Mike Dyall-Smith

Abstract read
In one paragraph

Article in Archaea (Vancouver, B.C.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Improving the genetic system forFrontiers in microbiology · 2023
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. JMT-1: a novel, spherical lytic halotolerant phage isolated from Yuncheng saline lake.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2018
    Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Archaeal extrachromosomal genetic elements.Microbiology and molecular biology reviews : MMBR · 2015
    Review
  16. Review
  17. Article
  18. Viruses of haloarchaea.Life (Basel, Switzerland) · 2014
    Review
  19. Molecular biology of fuselloviruses and their satellites.Extremophiles : life under extreme conditions · 2014
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Kate PorterBiota Holdings Limited, 10/585 Blackburn Road, Notting Hill, VIC 3168, Australia.
Sen-Lin Tang
Chung-Pin Chen
Pei-Wen Chiang
Mei-Jhu Hong
Mike Dyall-Smith

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Halovirus PH1 infects Haloarcula hispanica and was isolated from an Australian salt lake. The burst size in single-step growth conditions was 50-100 PFU/cell, but cell density did not decrease until well after the rise (4-6 hr p.i.), indicating that the virus could exit without cell lysis. Virions were round, 51 nm in diameter, displayed a layered capsid structure, and were sensitive to chloroform and lowered salt concentration. The genome is linear dsDNA, 28,064 bp in length, with 337 bp terminal repeats and terminal proteins, and could transfect haloarchaeal species belonging to five different genera. The genome is predicted to carry 49 ORFs, including those for structural proteins, several of which were identified by mass spectroscopy. The close similarity of PH1 to SH1 (74% nucleotide identity) allowed a detailed description and analysis of the differences (divergent regions) between the two genomes, including the detection of repeat-mediated deletions. The relationship of SH1-like and pleolipoviruses to previously described genomic loci of virus and plasmid-related elements (ViPREs) of haloarchaea revealed an extensive level of recombination between the known haloviruses. PH1 is a member of the same virus group as SH1 and HHIV-2, and we propose the name halosphaerovirus to accommodate these viruses.

Indexed as

Archaeal VirusesAustraliaDNA, ViralGenome, ViralHaloarculaMass SpectrometryMicroscopy, Electron, TransmissionMolecular Sequence DataOpen Reading FramesSequence Analysis, DNAViral ProteinsVirionWater MicrobiologyDNA, ViralViral Proteins

Identifiers

PMID23585730
PMCPMC3622292

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.