Evidence map›Paper›PMID 23585569›Full record

ReviewThe Journal of biological chemistry2013

Structure and mechanism of rhomboid protease.

Ya Ha, Yoshinori Akiyama, Yi Xue

Abstract readReview
In one paragraph

Review in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Collagen-Induced Arthritis Analysis inBiomolecules & therapeutics · 2018
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. iRhoms; Its Functions and Essential Roles.Biomolecules & therapeutics · 2016
    Article
  13. Article
  14. Article
  15. Cooperative roles of hydrophilic loop 1 and the C-terminus of presenilin 1 in the substrate-gating mechanism of γ-secretase.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2015
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Ya HaDepartment of Pharmacology, Yale School of Medicine, New Haven, Connecticut 06520, USA. ya.ha@yale.edu
Yoshinori Akiyama
Yi Xue

Funding

Structural studies of intramembrane protease GlpGR01GM082839 · NIGMS · YALE UNIVERSITY · PI HA, YA · 2008 to 2011
$1.3M
NIGMS NIH HHS GM082839NIGMS NIH HHS R01 GM082839
6 · The paper itself

Abstract

Rhomboid protease was first discovered in Drosophila. Mutation of the fly gene interfered with growth factor signaling and produced a characteristic phenotype of a pointed head skeleton. The name rhomboid has since been widely used to describe a large family of related membrane proteins that have diverse biological functions but share a common catalytic core domain composed of six membrane-spanning segments. Most rhomboid proteases cleave membrane protein substrates near the N terminus of their transmembrane domains. How these proteases function within the confines of the membrane is not completely understood. Recent progress in crystallographic analysis of the Escherichia coli rhomboid protease GlpG in complex with inhibitors has provided new insights into the catalytic mechanism of the protease and its conformational change. Improved biochemical assays have also identified a substrate sequence motif that is specifically recognized by many rhomboid proteases.

Indexed as

AnimalsCrystallography, X-RayDNA-Binding ProteinsDrosophilaDrosophila ProteinsEndopeptidasesEscherichia coliEscherichia coli ProteinsMembrane ProteinsProtein Structure, TertiaryStructure-Activity RelationshipDNA-Binding ProteinsDrosophila ProteinsEndopeptidasesEscherichia coli ProteinsGlpG protein, E coliMembrane ProteinsRho protein, DrosophilaEnzyme MechanismsMembrane ProteinsProtein StructureRhomboid ProteaseSerine Protease

Identifiers

PMID23585569
PMCPMC3668704

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.