Evidence map›Paper›PMID 23585474›Full record

ArticleThe Journal of clinical investigation2013

Opposing chemokine gradients control human thymocyte migration in situ.

Joanna Halkias, Heather J Melichar, Kayleigh T Taylor, Jenny O Ross, Bonnie Yen, Samantha B Cooper, Astar Winoto, Ellen A Robey

Open access · greenAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
  2. Basic interactions responsible for thymus function explain the convoluted medulla shape.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. The Thymus as a Mirror of the Body's Gene Expression.Advances in experimental medicine and biology · 2025
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Studying T Cell Development in Neonatal and Adult Thymic Slices.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  9. A Beginner's Guide to T Cell Development.Methods in molecular biology (Clifton, N.J.) · 2023
    Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Joanna HalkiasDivision of Immunology and Pathogenesis, Department of Molecular and Cell Biology, UC Berkeley, Berkeley, California 94720-3200, USA.
Heather J Melichar
Kayleigh T Taylor
Jenny O Ross
Bonnie Yen
Samantha B Cooper
Astar Winoto
Ellen A Robey
University of California, San Francisco · US

Funding

Signals That Control Thymocyte MigrationR01AI064227 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI ELLEN A ROBEY · 2006 to 2026
$7.4M
PROGRAMMED CELL DEATH IN NORMAL AND MALIGNANT T CELLSR01CA066236 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI WINOTO, ASTAR · 1995 to 2014
$4.7M
Expanding and upgrading a custom built 2-photon microscope for time lapse fluoresS10RR026821 · NCRR · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROBEY, ELLEN A · 2010 to 2010
$472k
NCI NIH HHS R01 CA066236NCRR NIH HHS 1S10RR026821NCRR NIH HHS S10 RR026821NIAID NIH HHS R01 AI064227
6 · The paper itself

Abstract

The ordered migration of thymocytes from the cortex to the medulla is critical for the appropriate selection of the mature T cell repertoire. Most studies of thymocyte migration rely on mouse models, but we know relatively little about how human thymocytes find their appropriate anatomical niches within the thymus. Moreover, the signals that retain CD4+CD8+ double-positive (DP) thymocytes in the cortex and prevent them from entering the medulla prior to positive selection have not been identified in mice or humans. Here, we examined the intrathymic migration of human thymocytes in both mouse and human thymic stroma and found that human thymocyte subsets localized appropriately to the cortex on mouse thymic stroma and that MHC-dependent interactions between human thymocytes and mouse stroma could maintain the activation and motility of DP cells. We also showed that CXCR4 was required to retain human DP thymocytes in the cortex, whereas CCR7 promoted migration of mature human thymocytes to the medulla. Thus, 2 opposing chemokine gradients control the migration of thymocytes from the cortex to the medulla. These findings point to significant interspecies conservation in thymocyte-stroma interactions and provide the first evidence that chemokines not only attract mature thymocytes to the medulla, but also play an active role in retaining DP thymocytes in the cortex prior to positive selection.

Indexed as

Chemotaxis, LeukocyteAnimalsCell CommunicationCell DifferentiationFlow CytometryHumansMiceMicroscopy, FluorescenceReceptors, CCR7Receptors, CXCR4ThymocytesThymus GlandT-Lymphocyte SubsetsCCR7 protein, humanCXCR4 protein, humanReceptors, CCR7Receptors, CXCR4

Identifiers

PMID23585474
PMCPMC3635739
OpenAlexW2078102740

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.