Evidence map›Paper›PMID 23585193›Full record

ArticleMolecular reproduction and development2013

Mass spectrometry and next-generation sequencing reveal an abundant and rapidly evolving abalone sperm protein.

Melody R Palmer, Margo H McDowall, Lia Stewart, Aleena Ouaddi, Michael J MacCoss, Willie J Swanson

Open access · bronzeAbstract read
In one paragraph

Article in Molecular reproduction and development, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Melody R PalmerDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195-5065, USA. mryner@uw.edu
Margo H McDowall
Lia Stewart
Aleena Ouaddi
Michael J MacCoss
Willie J Swanson
University of Washington · US

Funding

TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
Population Genetics of Reproductive Protein DiversityR01HD042563 · NICHD · UNIVERSITY OF WASHINGTON · PI SWANSON, WILLIE J · 2003 to 2010
$2.4M
Diversity Action Plan: UW GenOM ProjectR25HG007153 · NHGRI · UNIVERSITY OF WASHINGTON · PI EICHLER, EVAN · 2013 to 2020
$2.3M
Drosophila Seminal Fluid: Proteomic Discovery & Functional Variation AnalysesR01HD057974 · NICHD · UNIVERSITY OF WASHINGTON · PI SWANSON, WILLIE J · 2008 to 2012
$1.6M
NHGRI NIH HHS R25 HG007153NICHD NIH HHS 5R01HD042563NICHD NIH HHS 5R01HD057974NICHD NIH HHS R01 HD042563NICHD NIH HHS R01 HD057974NIGMS NIH HHS P41 GM103533
6 · The paper itself

Abstract

Abalone, a broadcast spawning marine mollusk, is an important model for molecular interactions and positive selection in fertilization, but the focus has previously been on only two sperm proteins, lysin and sp18. We used genomic and proteomic techniques to bring new insights to this model by characterizing the testis transcriptome and sperm proteome of the Red abalone Haliotis rufescens. One pair of homologous, testis-specific proteins contains a secretion signal and is small, abundant, and associated with the acrosome. Comparative analysis revealed that homologs are extremely divergent between species, and show strong evidence for positive selection. The acrosomal localization and rapid evolution of these proteins indicates that they play an important role in fertilization, and could be involved in the species-specificity of sperm-egg interactions in abalone. Our genomic and proteomic characterization of abalone fertilization resulted in the identification of interesting, novel peptides that have eluded detection in this important model system for 20 years.

Indexed as

Amino Acid SequenceAnimalsGastropodaGene Expression ProfilingHigh-Throughput Nucleotide SequencingMaleMass SpectrometryMolecular Sequence DataMucoproteinsOligonucleotide Array Sequence AnalysisPeptide MappingRNASequence AlignmentSequence Analysis, DNASpermatozoaTestisMucoproteinsRNA

Identifiers

PMID23585193
PMCPMC4031754
OpenAlexW2119228944

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.