Evidence map›Paper›PMID 23584780›Full record

ArticleApplied and environmental microbiology2013

Characterization of site-specific mutations in a short-chain-length/medium-chain-length polyhydroxyalkanoate synthase: in vivo and in vitro studies of enzymatic activity and substrate specificity.

Jo-Ann Chuah, Satoshi Tomizawa, Miwa Yamada, Takeharu Tsuge, Yoshiharu Doi, Kumar Sudesh, Keiji Numata

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. N-terminal truncation of PhaCMicrobial cell factories · 2024
    Article
  3. A review on poly(3-hydroxybutyrate-Frontiers in bioengineering and biotechnology · 2022
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

7 authors.

Jo-Ann ChuahEnzyme Research Team, Biomass Engineering Program, RIKEN, Saitama, Japan.
Satoshi Tomizawa
Miwa Yamada
Takeharu Tsuge
Yoshiharu Doi
Kumar Sudesh
Keiji Numata

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Saturation point mutagenesis was carried out at position 479 in the polyhydroxyalkanoate (PHA) synthase from Chromobacterium sp. strain USM2 (PhaC(Cs)) with specificities for short-chain-length (SCL) [(R)-3-hydroxybutyrate (3HB) and (R)-3-hydroxyvalerate (3HV)] and medium-chain-length (MCL) [(R)-3-hydroxyhexanoate (3HHx)] monomers in an effort to enhance the specificity of the enzyme for 3HHx. A maximum 4-fold increase in 3HHx incorporation and a 1.6-fold increase in PHA biosynthesis, more than the wild-type synthase, was achieved using selected mutant synthases. These increases were subsequently correlated with improved synthase activity and increased preference of PhaC(Cs) for 3HHx monomers. We found that substitutions with uncharged residues were beneficial, as they resulted in enhanced PHA production and/or 3HHx incorporation. Further analysis led to postulations that the size and geometry of the substrate-binding pocket are determinants of PHA accumulation, 3HHx fraction, and chain length specificity. In vitro activities for polymerization of 3HV and 3HHx monomers were consistent with in vivo substrate specificities. Ultimately, the preference shown by wild-type and mutant synthases for either SCL (C(4) and C(5)) or MCL (C(6)) substrates substantiates the fundamental classification of PHA synthases.

Indexed as

AcyltransferasesAmino Acid SequenceBase SequenceBlotting, WesternChromobacteriumMolecular Sequence DataMutagenesis, Site-DirectedPolyhydroxyalkanoatesSequence AlignmentSequence Analysis, DNASubstrate SpecificityAcyltransferasespoly(3-hydroxyalkanoic acid) synthasePolyhydroxyalkanoates

Identifiers

PMID23584780
PMCPMC3675958

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.