Evidence map›Paper›PMID 23583670›Full record

ArticleGenomics2013

Increased CNV-region deletions in mild cognitive impairment (MCI) and Alzheimer's disease (AD) subjects in the ADNI sample.

Guia Guffanti, Federica Torri, Jerod Rasmussen, Andrew P Clark, Anita Lakatos, Jessica A Turner, James H Fallon, Andrew J Saykin, Michael Weiner, ADNI the Alzheimer's Disease Neuroimaging Initiative and 4 more

Open access · greenAbstract read
In one paragraph

Article in Genomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 3 pooled it
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 3 syntheses or guidelines pooled it, 30 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Copy Number Variants in Alzheimer's Disease.Journal of Alzheimer's disease : JAD · 2017
    Pooled it
  4. Review
  5. Article
  6. A cross-comparison of cognitive ability across 8 genomic disorders.Current opinion in genetics & development · 2021
    Review
  7. Review
  8. Association of copy number variation across the genome with neuropsychiatric traits in the general population.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2018
    Article
  9. Review
  10. Genetics of psychosis of Alzheimer disease.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2017
    Review
  11. LINE1 insertions as a genomic risk factor for schizophrenia: Preliminary evidence from an affected family.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2016
    Article
  12. Article
  13. Review
  14. Article
  15. Transposable elements and psychiatric disorders.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2014
    Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 1 country.

Guia GuffantiDepartment of Psychiatry, Division of Child and Adolescent Psychiatry, Columbia University/NYSPI, New York, NY 10032, USA. Guffant@nyspi.columbia.edu
Federica Torri
Jerod Rasmussen
Andrew P Clark
Anita Lakatos
Jessica A Turner
James H Fallon
Andrew J Saykin
Michael Weiner
ADNI the Alzheimer's Disease Neuroimaging Initiative
Marquis P Vawter
James A Knowles
Steven G Potkin
Fabio Macciardi
University of California, Irvine · USUniversity of Southern California · USColumbia University · USIndiana University School of MedicineMind Research Network · USUniversity of California, San Francisco · US

Funding

Alzheimer's Disease Neuroimaging Initiative - SupplementU01AG024904 · NIA · NORTHERN CALIFORNIA INSTITUTE RES &EDUC · PI WEINER, MICHAEL W · 2004 to 2015
$121.0M
National Centralized Repository for Alzheimer's Disease and Related Dementias (NCRAD)U24AG021886 · NIA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI TATIANA M. FOROUD · 2002 to 2026
$119.8M
RECRUITMENT COREU19AG010483 · NIA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FELDMAN, HOWARD · 2013 to 2020
$80.6M
Research Education ComponentP30AG010133 · NIA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI SAYKIN, ANDREW J · 1991 to 2020
$37.3M
FUNCTION BIRNU24RR021992 · NCRR · UNIVERSITY OF CALIFORNIA-IRVINE · PI POTKIN, STEVEN G · 2006 to 2010
$25.0M
YALE CENTER FOR THE: LEARNING &ATTENTIONP41RR013642 · NCRR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BEARER, ELAINE L · 1998 to 2011
$21.9M
Memory Circuitry in MCI and Early Alzheimer’s Disease Prodrome: Molecular DriversR01AG019771 · NIA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI SAYKIN, ANDREW J · 2001 to 2021
$6.9M
Mitochondrial Dysfunction In SchizophreniaR01MH085801 · NIMH · UNIVERSITY OF CALIFORNIA-IRVINE · PI VAWTER, MARQUIS PHILIP · 2009 to 2020
$5.0M
Transdisciplinary Imaging Genetics Center (RMI)P20RR020837 · NCRR · UNIVERSITY OF CALIFORNIA-IRVINE · PI POTKIN, STEVEN G · 2004 to 2006
$1.7M
NCRR NIH HHS P20 RR020837NCRR NIH HHS P41 RR013642NCRR NIH HHS TIGC-P20 RR020837-01NCRR NIH HHS U24 RR021992NCRR NIH HHS U24-RR021992NIA NIH HHS 3U01AG024904-03S5NIA NIH HHS P30 AG010133NIA NIH HHS R01 AG019771NIA NIH HHS U01 AG024904NIA NIH HHS U01 AG024904-01NIA NIH HHS U19 AG010483NIA NIH HHS U24 AG021886NIMH NIH HHS R01 MH085801
6 · The paper itself

Abstract

We investigated the genome-wide distribution of CNVs in the Alzheimer's disease (AD) Neuroimaging Initiative (ADNI) sample (146 with AD, 313 with Mild Cognitive Impairment (MCI), and 181 controls). Comparison of single CNVs between cases (MCI and AD) and controls shows overrepresentation of large heterozygous deletions in cases (p-value<0.0001). The analysis of CNV-Regions identifies 44 copy number variable loci of heterozygous deletions, with more CNV-Regions among affected than controls (p=0.005). Seven of the 44 CNV-Regions are nominally significant for association with cognitive impairment. We validated and confirmed our main findings with genome re-sequencing of selected patients and controls. The functional pathway analysis of the genes putatively affected by deletions of CNV-Regions reveals enrichment of genes implicated in axonal guidance, cell-cell adhesion, neuronal morphogenesis and differentiation. Our findings support the role of CNVs in AD, and suggest an association between large deletions and the development of cognitive impairment.

Indexed as

DNA Copy Number VariationsDNA Mutational AnalysisAgedAged, 80 and overAlzheimer DiseaseCognition DisordersCognitive DysfunctionFemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansMaleNeuroimagingPolymorphism, Single NucleotideSequence DeletionAlzheimer's diseaseCopy Number Variable Regions (CNV-Regions)Copy Number Variations (CNVs)Genome-wide scanNext Generation Sequencing (NGS)

Identifiers

PMID23583670
PMCPMC4012421
OpenAlexW2101661727

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.