Evidence map›Paper›PMID 23583182›Full record

ArticleCell reports2013

Stress-independent activation of XBP1s and/or ATF6 reveals three functionally diverse ER proteostasis environments.

Matthew D Shoulders, Lisa M Ryno, Joseph C Genereux, James J Moresco, Patricia G Tu, Chunlei Wu, John R Yates, Andrew I Su, Jeffery W Kelly, R Luke Wiseman

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 367 papers.

0numbers the graph read from it
0cells of the map it votes in
367citing papers in PubMed
17.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

367 citing papers in PubMed, 575 citations in OpenAlex.

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307 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Matthew D ShouldersDepartment of Chemistry, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.
Lisa M Ryno
Joseph C Genereux
James J Moresco
Patricia G Tu
Chunlei Wu
John R Yates
Andrew I Su
Jeffery W Kelly
R Luke Wiseman
Scripps Research Institute · US

Funding

ZDS2P REGULATES SWE1P-DEPENDENT POLARIZED CELL GROWTH IN S CEREVISIAEP41RR011823 · NCRR · UNIVERSITY OF WASHINGTON · PI DAVIS, TRACY · 1996 to 2011
$24.7M
TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
Probing the Biochemical Mechanisms of Amyloid DiseaseR01DK046335 · NIDDK · SCRIPPS RESEARCH INSTITUTE, THE · PI KELLY, JEFFERY W · 1998 to 2025
$8.8M
Probing the biochemical mechanism of amyloid diseaseR37DK046335 · NIDDK · SCRIPPS RESEARCH INSTITUTE, THE · PI KELLY, JEFFERY W · 2006 to 2015
$5.9M
Understanding and Ameliorating Loss-of-Function Protein Misfolding DiseasesR01DK075295 · NIDDK · SCRIPPS RESEARCH INSTITUTE, THE · PI KELLY, JEFFERY W · 2006 to 2014
$3.9M
Genetic Regulation of the Response to Dietary RestrictionR01AG027463 · NIA · UNIVERSITY OF CALIFORNIA BERKELEY · PI DILLIN, ANDREW G · 2008 to 2012
$2.4M
Sensing Protein Folding Capacity in the Cell During AgingRC2AG036634 · NIA · SCRIPPS RESEARCH INSTITUTE, THE · PI BALCH, WILLIAM EDWARD, DILLIN, ANDREW G · 2009 to 2010
$1.1M
Proteostasis Network Factors Involved in Apolipoprotein B Folding and SecretionF32HL099245 · NHLBI · SCRIPPS RESEARCH INSTITUTE, THE · PI GENEREUX, JOSEPH · 2010 to 2012
$146k
BIOCHEMICAL MECHANISM OF AMYLOID DISEASER29DK046335 · NIDDK · TEXAS A&M UNIVERSITY SYSTEM · PI KELLY, JEFFERY W · 1993 to 1997
–
NCRR NIH HHS P41 RR011823NCRR NIH HHS P41RR011823NHLBI NIH HHS F32 HL099245NHLBI NIH HHS F32-HL099245NIA NIH HHS AG027463NIA NIH HHS AG036634NIA NIH HHS R01 AG027463NIA NIH HHS RC2 AG036634NIDDK NIH HHS DK046335NIDDK NIH HHS DK075295NIDDK NIH HHS R01 DK046335NIDDK NIH HHS R01 DK075295NIDDK NIH HHS R37 DK046335NIGMS NIH HHS P41 GM103533NIGMS NIH HHS P41GM103533
6 · The paper itself

Abstract

The unfolded protein response (UPR) maintains endoplasmic reticulum (ER) proteostasis through the activation of transcription factors such as XBP1s and ATF6. The functional consequences of these transcription factors for ER proteostasis remain poorly defined. Here, we describe methodology that enables orthogonal, small-molecule-mediated activation of the UPR-associated transcription factors XBP1s and/or ATF6 in the same cell independent of stress. We employ transcriptomics and quantitative proteomics to evaluate ER proteostasis network remodeling owing to the XBP1s and/or ATF6 transcriptional programs. Furthermore, we demonstrate that the three ER proteostasis environments accessible by activating XBP1s and/or ATF6 differentially influence the folding, trafficking, and degradation of destabilized ER client proteins without globally affecting the endogenous proteome. Our data reveal how the ER proteostasis network is remodeled by the XBP1s and/or ATF6 transcriptional programs at the molecular level and demonstrate the potential for selective restoration of aberrant ER proteostasis of pathologic, destabilized proteins through arm-selective UPR activation.

Indexed as

Activating Transcription Factor 6DNA-Binding ProteinsDoxorubicinEndoplasmic ReticulumHEK293 CellsHep G2 CellsHumansPrealbuminProtein FoldingProteomicsRegulatory Factor X Transcription FactorsTranscription FactorsTranscription, GeneticTranscriptomeTrimethoprimUnfolded Protein ResponseActivating Transcription Factor 6DNA-Binding ProteinsDoxorubicinPrealbuminRegulatory Factor X Transcription FactorsTranscription FactorsTrimethoprimX-Box Binding Protein 1XBP1 protein, human

Identifiers

PMID23583182
PMCPMC3754422
OpenAlexW1994772574

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.