Evidence map›Paper›PMID 23582304›Full record

ArticleVirology2013

A comparative mutational analysis of HIV-1 Vpu subtypes B and C for the identification of determinants required to counteract BST-2/Tetherin and enhance viral egress.

Janet L Douglas, Ying Bai, Jean K Gustin, Ashlee V Moses

Abstract read
In one paragraph

Article in Virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Trial
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  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Janet L DouglasVaccine and Gene Therapy Institute, Oregon Health & Science University, 505 NW 185th Ave, Beaverton, OR 97006, USA. dougljan@ohsu.edu
Ying Bai
Jean K Gustin
Ashlee V Moses

Funding

Characterization of Vpu-mediated degradation of BST-2R01AI090490 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI MOSES, ASHLEE V. · 2010 to 2014
$2.0M
The Role of HIV-1 Vpu in the Regulation of CD40R01AI063938 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI MOSES, ASHLEE V. · 2005 to 2009
$1.6M
NIAID NIH HHS 5-R01-AI063938-03NIAID NIH HHS R01 AI063938NIAID NIH HHS R01 AI090490NIAID NIH HHS R01-AI090490-01A1
6 · The paper itself

Abstract

We have undertaken a genetic strategy to map Vpu regions necessary for BST-2 antagonism and viral egress. This approach is based on our identification of an egress-defective Vpu variant encoded by an HIV-1 subtype C strain. We constructed a series of chimeric Vpu molecules made from the Vpu C variant and Vpu B from a standard laboratory strain. The TM domain from the inactive Vpu C, which contains multiple non-conserved residues, was responsible for a significant decrease in egress activity and BST-2 downregulation, confirming the functional importance of the Vpu TM domain. However, for complete inactivation, both the N-terminus and TM domain from the inactive Vpu C molecule were required, suggesting a new role for the Vpu N-terminus. In addition, determinants in the C-terminus of Vpu B that may be involved in efficient TGN accumulation were also necessary for enhanced viral egress but are missing or non-functional in Vpu C.

Indexed as

Virus ReleaseAmino Acid SequenceAntigens, CDBone Marrow Stromal Antigen 2Cell LineDNA Mutational AnalysisGPI-Linked ProteinsHIV-1Human Immunodeficiency Virus ProteinsHumansMolecular Sequence DataViral Regulatory and Accessory ProteinsViroporin ProteinsAntigens, CDBone Marrow Stromal Antigen 2BST2 protein, humanGPI-Linked ProteinsHuman Immunodeficiency Virus ProteinsViral Regulatory and Accessory ProteinsViroporin Proteinsvpu protein, Human immunodeficiency virus 1

Identifiers

PMID23582304
PMCPMC3760674

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.