Evidence map›Paper›PMID 23580649›Full record

ArticleThe Journal of biological chemistry2013

The sld genetic defect: two intronic CA repeats promote insertion of the subsequent intron and mRNA decay.

Biswadip Das, Melanie N Cash, Bently Robinson, Christopher S Kuhns, Lisa R Latchney, Margaret A Fallon, Rosemary W Elliott, Arthur R Hand, David J Culp

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.1field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Biswadip DasDepartment of Oral Biology, College of Dentistry, University of Florida, Gainesville, Florida 32610, USA.
Melanie N Cash
Bently Robinson
Christopher S Kuhns
Lisa R Latchney
Margaret A Fallon
Rosemary W Elliott
Arthur R Hand
David J Culp
University of Florida · USUniversity of Rochester Medical Center · USRoswell Park Comprehensive Cancer Center · USUConn Health · US

Funding

The Florida Research Infrastructure Enhancement PlanU24DE016509 · NIDCR · UNIVERSITY OF FLORIDA · PI BURNE, ROBERT A · 2004 to 2005
$2.9M
SALIVARY MUCOUS CELL GENE EXPRESSIONR01DE014730 · NIDCR · UNIVERSITY OF ROCHESTER · PI CULP, DAVID JOHN · 2003 to 2007
$1.8M
NIDCR NIH HHS DE014730NIDCR NIH HHS DE016509NIDCR NIH HHS R01 DE014730NIDCR NIH HHS U24 DE016509
6 · The paper itself

Abstract

The autosomal recessive mutation, sld, attenuates mucous cell expression in murine sublingual glands with corresponding effects on mucin 19 (Muc19). We conducted a systematic study including genetic mapping, sequencing, and functional analyses to elucidate a mutation to explain the sld phenotype in neonatal mice. Genetic mapping and gene expression analyses localized the sld mutation within the gene Muc19/Smgc, specifically attenuating Muc19 transcripts, and Muc19 knock-out mice mimic the sld phenotype in neonates. Muc19 transcription is unaffected in sld mice, whereas mRNA stability is markedly decreased. Decreased mRNA stability is not due to a defect in 3'-end processing nor to sequence differences in Muc19 transcripts. Comparative sequencing of the Muc19/Smgc gene identified four candidate intronic mutations within the Muc19 coding region. Minigene splicing assays revealed a novel splicing event in which insertion of two additional repeats within a CA repeat region of intron 53 of the sld genome enhances retention of intron 54, decreasing the levels of correctly spliced transcripts. Moreover, pateamine A, an inhibitor of nonsense-mediated mRNA decay, inhibits degradation of aberrant Muc19 transcripts. The mutation in intron 53 thus enhances aberrant splicing leading to degradation of aberrant transcripts and decreased Muc19 message stability, consistent with the sld phenotype. We propose a working model of the unique splicing event enhanced by the mutation, as well as putative explanations for the gradual but limited increase in Muc19 glycoprotein expression and its restricted localization to subpopulations of mucous cells in sld mice during postnatal gland development.

Indexed as

Models, BiologicalMutationAlternative SplicingAnimalsGene Expression RegulationIntronsMiceMice, KnockoutMucinsOpen Reading FramesRNA, MessengerRNA StabilitySublingual GlandMuc19 protein, mouseMucinsRNA, MessengerGene MappingMuc19MucinsMutantNonsense-mediated DecayRNA ProcessingRNA Splicing

Identifiers

PMID23580649
PMCPMC3663499
OpenAlexW2045474674

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.