Evidence map›Paper›PMID 23580648›Full record

ArticleThe Journal of biological chemistry2013

Atypical cohesin-dockerin complex responsible for cell surface attachment of cellulosomal components: binding fidelity, promiscuity, and structural buttresses.

Orly Salama-Alber, Maroor K Jobby, Seth Chitayat, Steven P Smith, Bryan A White, Linda J W Shimon, Raphael Lamed, Felix Frolow, Edward A Bayer

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 46 citations in OpenAlex.

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  20. Structural characterization of a novel autonomous cohesin from Ruminococcus flavefaciens.Acta crystallographica. Section F, Structural biology communications · 2014
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Orly Salama-AlberDepartments of Biological Chemistry, Rehovot 76100, Israel.
Maroor K JobbyDepartment of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario K7L 3N6, Canada.
Seth ChitayatDepartment of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario K7L 3N6, Canada.
Steven P SmithDepartment of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario K7L 3N6, Canada.
Bryan A WhiteDepartment of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801.
Linda J W ShimonChemical Services, The Weizmann Institute of Science, Rehovot 76100, Israel.
Raphael LamedDepartment of Molecular Microbiology and Biotechnology, Ramat Aviv 69978, Israel.
Felix FrolowDepartment of Molecular Microbiology and Biotechnology, Ramat Aviv 69978, Israel; Daniella Rich Institute for Structural Biology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv 69978, Israel. Electronic address: mbfrolow@post.tau.ac.il.
Edward A BayerDepartments of Biological Chemistry, Rehovot 76100, Israel. Electronic address: ed.bayer@weizmann.ac.il.
Queen's University · CATel Aviv University · ILUniversity of Illinois Urbana-Champaign · USWeizmann Institute of Science · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rumen bacterium Ruminococcus flavefaciens produces a highly organized multienzyme cellulosome complex that plays a key role in the degradation of plant cell wall polysaccharides, notably cellulose. The R. flavefaciens cellulosomal system is anchored to the bacterial cell wall through a relatively small ScaE scaffoldin subunit, which bears a single type IIIe cohesin responsible for the attachment of two major dockerin-containing scaffoldin proteins, ScaB and the cellulose-binding protein CttA. Although ScaB recruits the catalytic machinery onto the complex, CttA mediates attachment of the bacterial substrate via its two putative carbohydrate-binding modules. In an effort to understand the structural basis for assembly and cell surface attachment of the cellulosome in R. flavefaciens, we determined the crystal structure of the high affinity complex (Kd = 20.83 nM) between the cohesin module of ScaE (CohE) and its cognate X-dockerin (XDoc) modular dyad from CttA at 1.97-Å resolution. The structure reveals an atypical calcium-binding loop containing a 13-residue insert. The results further pinpoint two charged specificity-related residues on the surface of the cohesin module that are responsible for specific versus promiscuous cross-strain binding of the dockerin module. In addition, a combined functional role for the three enigmatic dockerin inserts was established whereby these extraneous segments serve as structural buttresses that reinforce the stalklike conformation of the X-module, thus segregating its tethered complement of cellulosomal components from the cell surface. The novel structure of the RfCohE-XDoc complex sheds light on divergent dockerin structure and function and provides insight into the specificity features of the type IIIe cohesin-dockerin interaction.

Indexed as

Bacterial ProteinsCell Cycle ProteinsCelluloseChromosomal Proteins, Non-HistoneCohesinsCrystallography, X-RayProtein Structure, QuaternaryProtein Structure, SecondaryProtein SubunitsRuminococcusStructure-Activity RelationshipBacterial ProteinsCell Cycle ProteinsCelluloseChromosomal Proteins, Non-HistoneCohesinsProtein SubunitsScaB protein, RuminococcusBiofuelCalcium-binding ProteinsCarbohydrate-binding ProteinCellulaseCellulose DegradationLignocellulosic BiomassModular ProteinsMultienzyme ComplexRuminococcus flavefaciensX-ray Crystallography

Identifiers

PMID23580648
PMCPMC3675615
OpenAlexW2049379761

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.