Evidence map›Paper›PMID 23580646›Full record

ArticleThe Journal of biological chemistry2013

Structural insights into the substrate specificity of a 6-phospho-β-glucosidase BglA-2 from Streptococcus pneumoniae TIGR4.

Wei-Li Yu, Yong-Liang Jiang, Andreas Pikis, Wang Cheng, Xiao-Hui Bai, Yan-Min Ren, John Thompson, Cong-Zhao Zhou, Yuxing Chen

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
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  5. Article
  6. ThermophilicFrontiers in microbiology · 2022
    Article
  7. Comparative genome analysis of fourComputational and structural biotechnology journal · 2022
    Article
  8. Gut Microbiome in Chronic Coronary Syndrome Patients.Journal of clinical medicine · 2021
    Article
  9. Article
  10. Cross-utilization of β-galactosides and cellobiose inThe Journal of biological chemistry · 2020
    Article
  11. Molecular analysis of an enigmaticThe Journal of biological chemistry · 2019
    Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Wei-Li YuHefei National Laboratory for Physical Sciences at the Microscale and School of Life Sciences, University of Science and Technology of China, Hefei Anhui 230027, China.
Yong-Liang Jiang
Andreas Pikis
Wang Cheng
Xiao-Hui Bai
Yan-Min Ren
John Thompson
Cong-Zhao Zhou
Yuxing Chen
Hefei National Center for Physical Sciences at Nanoscale · CNUniversity of Science and Technology of China · CNCenter for Drug Evaluation and Research · USNational Institutes of Health · US

Funding

Regulation Of Sugar Transport And Metabolism In Oral BacteriaZIADE000341 · NIDCR · NATIONAL INSTITUTE OF DENTAL & CRANIOFACIAL RESEARCH · PI THOMPSON, JOHN · 2009 to 2013
$1.8M
6 · The paper itself

Abstract

The 6-phospho-β-glucosidase BglA-2 (EC 3.2.1.86) from glycoside hydrolase family 1 (GH-1) catalyzes the hydrolysis of β-1,4-linked cellobiose 6-phosphate (cellobiose-6'P) to yield glucose and glucose 6-phosphate. Both reaction products are further metabolized by the energy-generating glycolytic pathway. Here, we present the first crystal structures of the apo and complex forms of BglA-2 with thiocellobiose-6'P (a non-metabolizable analog of cellobiose-6'P) at 2.0 and 2.4 Å resolution, respectively. Similar to other GH-1 enzymes, the overall structure of BglA-2 from Streptococcus pneumoniae adopts a typical (β/α)8 TIM-barrel, with the active site located at the center of the convex surface of the β-barrel. Structural analyses, in combination with enzymatic data obtained from site-directed mutant proteins, suggest that three aromatic residues, Tyr(126), Tyr(303), and Trp(338), at subsite +1 of BglA-2 determine substrate specificity with respect to 1,4-linked 6-phospho-β-glucosides. Moreover, three additional residues, Ser(424), Lys(430), and Tyr(432) of BglA-2, were found to play important roles in the hydrolytic selectivity toward phosphorylated rather than non-phosphorylated compounds. Comparative structural analysis suggests that a tryptophan versus a methionine/alanine residue at subsite -1 may contribute to the catalytic and substrate selectivity with respect to structurally similar 6-phospho-β-galactosidases and 6-phospho-β-glucosidases assigned to the GH-1 family.

Indexed as

Amino Acid SubstitutionBacterial ProteinsCatalytic DomainCrystallography, X-RayGlucosidasesMutation, MissenseProtein Structure, SecondaryStreptococcus pneumoniaeStructure-Activity RelationshipSubstrate Specificity6-phospho-beta-glucosidaseBacterial ProteinsGlucosidases6-Phospho-β-glucosidaseCrystal StructureEnzyme CatalysisEnzyme MechanismsPEP-PTSPneumoniaStreptococcusSubstrate SpecificityThiocellobiose 6-Phosphate

Identifiers

PMID23580646
PMCPMC3663516
OpenAlexW2016509969

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.