Evidence map›Paper›PMID 23580551›Full record

ArticleNucleic acids research2013

Quantitative in vivo analysis of chromatin binding of Polycomb and Trithorax group proteins reveals retention of ASH1 on mitotic chromatin.

Philipp A Steffen, João Pedro Fonseca, Cornelia Gänger, Eva Dworschak, Tobias Kockmann, Christian Beisel, Leonie Ringrose

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
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  5. AmedRxiv : the preprint server for health sciences · 2023
    Article
  6. Nuclear architecture and the structural basis of mitotic memory.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2023
    Review
  7. Article
  8. Article
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  15. Article
  16. Development (Cambridge, England) · 2018
    Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Philipp A SteffenInstitute of Molecular Biotechnology, Dr Bohr-Gasse 3, 1030 Vienna, Austria.
João Pedro Fonseca
Cornelia Gänger
Eva Dworschak
Tobias Kockmann
Christian Beisel
Leonie Ringrose
Institute of Molecular Biotechnology · ATUniversity of Basel · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Polycomb (PcG) and Trithorax (TrxG) group proteins work antagonistically on several hundred developmentally important target genes, giving stable mitotic memory, but also allowing flexibility of gene expression states. How this is achieved in quantitative terms is poorly understood. Here, we present a quantitative kinetic analysis in living Drosophila of the PcG proteins Enhancer of Zeste, (E(Z)), Pleiohomeotic (PHO) and Polycomb (PC) and the TrxG protein absent, small or homeotic discs 1 (ASH1). Fluorescence recovery after photobleaching and fluorescence correlation spectroscopy reveal highly dynamic chromatin binding behaviour for all proteins, with exchange occurring within seconds. We show that although the PcG proteins substantially dissociate from mitotic chromatin, ASH1 remains robustly associated with chromatin throughout mitosis. Finally, we show that chromatin binding by ASH1 and PC switches from an antagonistic relationship in interphase, to a cooperative one during mitosis. These results provide quantitative insights into PcG and TrxG chromatin-binding dynamics and have implications for our understanding of the molecular nature of epigenetic memory.

Indexed as

AnimalsAnimals, Genetically ModifiedChromatinDNA-Binding ProteinsDrosophilaDrosophila ProteinsEmbryo, NonmammalianGreen Fluorescent ProteinsMitosisNeural Stem CellsNuclear ProteinsPolycomb-Group ProteinsPolycomb Repressive Complex 2Recombinant Fusion ProteinsTranscription FactorsASH1 protein, DrosophilaChromatinDNA-Binding ProteinsDrosophila Proteinsenhanced green fluorescent proteinE(z) protein, DrosophilaGreen Fluorescent ProteinsNuclear Proteinspho protein, DrosophilaPolycomb-Group ProteinsPolycomb Repressive Complex 2Recombinant Fusion ProteinsTranscription Factors

Identifiers

PMID23580551
PMCPMC3664806
OpenAlexW2081010432

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.