Evidence map›Paper›PMID 23578292›Full record

ArticleThe Plant journal : for cell and molecular biology2013

A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves.

Richard Hickman, Claire Hill, Christopher A Penfold, Emily Breeze, Laura Bowden, Jonathan D Moore, Peijun Zhang, Alison Jackson, Emma Cooke, Findlay Bewicke-Copley and 6 more

Abstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 107 papers.

0numbers the graph read from it
0cells of the map it votes in
107citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

107 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Identification of a Novel GeneInternational journal of molecular sciences · 2024
    Article
  8. Article
  9. Review
  10. Article
  11. Identification and characterization ofFrontiers in plant science · 2024
    Article
  12. NACs, generalist in plant life.Plant biotechnology journal · 2023
    Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

47 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Richard HickmanWarwick Systems Biology Centre, University of Warwick, Coventry, CV4 7AL, UK.
Claire HillSchool of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK.
Christopher A PenfoldWarwick Systems Biology Centre, University of Warwick, Coventry, CV4 7AL, UK.
Emily BreezeWarwick Systems Biology Centre, University of Warwick, Coventry, CV4 7AL, UK.
Laura BowdenSchool of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK.
Jonathan D MooreWarwick Systems Biology Centre, University of Warwick, Coventry, CV4 7AL, UK.
Peijun ZhangSchool of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK.
Alison JacksonSchool of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK.
Emma CookeMolecular Organisation and Assembly of Cells Doctoral Training Centre, University of Warwick, Coventry, CV4 7AL, UK.
Findlay Bewicke-CopleySchool of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK.
Andrew MeadSchool of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK.
Jim BeynonWarwick Systems Biology Centre, University of Warwick, Coventry, CV4 7AL, UK.
David L WildWarwick Systems Biology Centre, University of Warwick, Coventry, CV4 7AL, UK.
Katherine J DenbyWarwick Systems Biology Centre, University of Warwick, Coventry, CV4 7AL, UK.
Sascha OttWarwick Systems Biology Centre, University of Warwick, Coventry, CV4 7AL, UK.
Vicky Buchanan-WollastonWarwick Systems Biology Centre, University of Warwick, Coventry, CV4 7AL, UK.

Funding

Biotechnology and Biological Sciences Research Council BB/F005806/1
6 · The paper itself

Abstract

A model is presented describing the gene regulatory network surrounding three similar NAC transcription factors that have roles in Arabidopsis leaf senescence and stress responses. ANAC019, ANAC055 and ANAC072 belong to the same clade of NAC domain genes and have overlapping expression patterns. A combination of promoter DNA/protein interactions identified using yeast 1-hybrid analysis and modelling using gene expression time course data has been applied to predict the regulatory network upstream of these genes. Similarities and divergence in regulation during a variety of stress responses are predicted by different combinations of upstream transcription factors binding and also by the modelling. Mutant analysis with potential upstream genes was used to test and confirm some of the predicted interactions. Gene expression analysis in mutants of ANAC019 and ANAC055 at different times during leaf senescence has revealed a distinctly different role for each of these genes. Yeast 1-hybrid analysis is shown to be a valuable tool that can distinguish clades of binding proteins and be used to test and quantify protein binding to predicted promoter motifs.

Indexed as

Gene Expression Regulation, PlantStress, PhysiologicalArabidopsisArabidopsis ProteinsBotrytisCellular SenescenceGene Expression ProfilingGene Regulatory NetworksMutationOligonucleotide Array Sequence AnalysisPlant DiseasesPlant LeavesPlants, Genetically ModifiedPromoter Regions, GeneticProtein BindingTranscription FactorsANAC055 protein, ArabidopsisANAC072 protein, ArabidopsisArabidopsis ProteinsNAC019 protein, ArabidopsisTranscription Factors

Identifiers

PMID23578292
PMCPMC3781708

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.