Evidence map›Paper›PMID 23578210›Full record

ArticleBiochemistry2013

The hemophore HasA from Yersinia pestis (HasAyp) coordinates hemin with a single residue, Tyr75, and with minimal conformational change.

Ritesh Kumar, Scott Lovell, Hirotoshi Matsumura, Kevin P Battaile, Pierre Moënne-Loccoz, Mario Rivera

Abstract read
In one paragraph

Article in Biochemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. HmuY proteins of theFrontiers in cellular and infection microbiology · 2025
    Article
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  8. Article
  9. Metallotherapeutics development in the age of iron-clad bacteria.Metallomics : integrated biometal science · 2020
    Review
  10. Article
  11. Mitochondria Targeting as an Effective Strategy for Cancer Therapy.International journal of molecular sciences · 2020
    Review
  12. Article
  13. Article
  14. Bioscience reports · 2018
    Article
  15. Ironing Out the Unconventional Mechanisms of Iron Acquisition and Gene Regulation inFrontiers in cellular and infection microbiology · 2017
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ritesh KumarCenter for Bioinformatics, University of Kansas, 2030 Becker Drive, Lawrence, KS 66047, USA.
Scott Lovell
Hirotoshi Matsumura
Kevin P Battaile
Pierre Moënne-Loccoz
Mario Rivera

Funding

TRAFFICKING OF THE PLASMA MEMBRANE CA2+-ATPASE TO RAFTSP20RR017708 · NCRR · UNIVERSITY OF KANSAS LAWRENCE · PI HOLYOAK, TODD · 2002 to 2011
$20.1M
Protein Structure and FunctionP20GM103420 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI HANZLIK, ROBERT P · 2012 to 2012
$2.0M
NCRR NIH HHS 5P20RR017708-10NCRR NIH HHS P20 RR017708NIGMS NIH HHS 8 P20 GM103420-10NIGMS NIH HHS P20 GM103420
6 · The paper itself

Abstract

Hemophores from Serratia marcescens (HasA(sm)) and Pseudomonas aeruginosa (HasA(p)) bind hemin between two loops, which harbor the axial ligands H32 and Y75. Hemin binding to the Y75 loop triggers closing of the H32 loop and enables binding of H32. Because Yersinia pestis HasA (HasA(yp)) presents a Gln at position 32, we determined the structures of apo- and holo-HasA(yp). Surprisingly, the Q32 loop in apo-HasA(yp) is already in the closed conformation, but no residue from the Q32 loop binds hemin in holo-HasA(yp). In agreement with the minimal reorganization between the apo- and holo-structures, the hemin on-rate is too fast to detect by conventional stopped-flow measurements.

Indexed as

Bacterial ProteinsBinding SitesCrystallography, X-RayHeminModels, MolecularProtein ConformationTyrosineYersinia pestisBacterial ProteinsHeminTyrosine

Identifiers

PMID23578210
PMCPMC4486319

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.