Evidence map›Paper›PMID 23575370›Full record

ArticleThe ISME journal2013

Combined effect of loss of the caa3 oxidase and Crp regulation drives Shewanella to thrive in redox-stratified environments.

Guangqi Zhou, Jianhua Yin, Haijiang Chen, Yijie Hua, Linlin Sun, Haichun Gao

Open access · bronzeAbstract read
In one paragraph

Article in The ISME journal, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
7.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 79 citations in OpenAlex.

  1. Article
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  5. The electron transport chain ofApplied and environmental microbiology · 2024
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  7. A novel bacterial sulfite dehydrogenase that requires threeApplied and environmental microbiology · 2023
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  11. Pleiotropic Effects of Hfq on the CytochromeApplied and environmental microbiology · 2022
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  12. Article
  13. Complex Interplay of Heme-Copper Oxidases with Nitrite and Nitric Oxide.International journal of molecular sciences · 2022
    Review
  14. Life (Basel, Switzerland) · 2021
    Article
  15. Promoting Extracellular Electron Transfer ofFrontiers in microbiology · 2021
    Article
  16. Article
  17. Article
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  19. Article
  20. Complex Oxidation of ApocytochromesApplied and environmental microbiology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Guangqi ZhouInstitute of Microbiology and College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang, China.
Jianhua Yin
Haijiang Chen
Yijie Hua
Linlin Sun
Haichun Gao
Zhejiang University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Shewanella species are a group of facultative Gram-negative microorganisms with remarkable respiration abilities that allow the use of a diverse array of terminal electron acceptors (EA). Like most bacteria, S. oneidensis possesses multiple terminal oxidases, including two heme-copper oxidases (caa3- and cbb3-type) and a bd-type quinol oxidase. As aerobic respiration is energetically favored, mechanisms underlying the fact that these microorganisms thrive in redox-stratified environments remain vastly unexplored. In this work, we discovered that the cbb3-type oxidase is the predominant system for respiration of oxygen (O2), especially when O2 is abundant. Under microaerobic conditions, the bd-type quinol oxidase has a significant role in addition to the cbb3-type oxidase. In contrast, multiple lines of evidence suggest that under test conditions the caa3-type oxidase, an analog to the mitochondrial enzyme, has no physiological significance, likely because of its extremely low expression. In addition, expression of both cbb3- and bd-type oxidases is under direct control of Crp (cAMP receptor protein) but not the well-established redox regulator Fnr (fumarate nitrate regulator) of canonical systems typified in Escherichia coli. These data, collectively, suggest that adaptation of S. oneidensis to redox-stratified environments is likely due to functional loss of the caa3-type oxidase and switch of the regulatory system for respiration.

Indexed as

Environmental MicrobiologyGene Expression Regulation, BacterialAerobiosisBase SequenceCyclic AMP Receptor ProteinCytochromesElectron Transport Complex IVMolecular Sequence DataOxidation-ReductionOxidoreductasesOxygenShewanellacbb3 oxidaseCyclic AMP Receptor ProteinCytochromesElectron Transport Complex IVOxidoreductasesOxygen

Identifiers

PMID23575370
PMCPMC3749501
OpenAlexW2046221351

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.