Evidence map›Paper›PMID 23573960›Full record

ArticleBioconjugate chemistry2013

Engineering fluorogen activating proteins into self-assembling materials.

Matthew J Saunders, Wen Liu, Christopher Szent-Gyorgyi, Yi Wen, Zachary Drennen, Alan S Waggoner, Wilson S Meng

Open access · greenAbstract read
In one paragraph

Article in Bioconjugate chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 29 citations in OpenAlex.

  1. Designing lysate-based hydrogels for on-demand therapy.Journal of pharmaceutical analysis · 2026
    Review
  2. Review
  3. Article
  4. Article
  5. Multicomponent peptide assemblies.Chemical Society reviews · 2018
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Local retention of antibodies in vivo with an injectable film embedded with a fluorogen-activating protein.Journal of controlled release : official journal of the Controlled Release Society · 2016
    Article
  11. Review
  12. Article
  13. Salt-Dependent Aggregation and Assembly of E coli-Expressed Ferritin.Dose-response : a publication of International Hormesis Society
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Matthew J SaundersMolecular Biosensor and Imaging Center, Carnegie Mellon University, Pittsburgh, PA, USA. matsaun@andrew.cmu.edu
Wen Liu
Christopher Szent-Gyorgyi
Yi Wen
Zachary Drennen
Alan S Waggoner
Wilson S Meng
Duquesne University · USCarnegie Mellon University · US

Funding

FLUORESCENT PROBES &IMAGING FOR NETWORKS &PATHWAY(RMI)U54RR022241 · NCRR · MELLON PITTS CORPORATION (MPC CORP) · PI WAGGONER, ALAN S. · 2005 to 2011
$19.9M
Fluorescent Biosensors for Networks and PathwaysU54GM103529 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI WAGGONER, ALAN S. · 2012 to 2013
$6.3M
RNA homodimerization strand displacement pathways to extended duplexes: Atomistic details for a mechanistic paradigm to identify unique antiviral targets for current and emerging viral pandemicsR15AI191143 · NIAID · DUQUESNE UNIVERSITY · PI EVANSECK, JEFFREY D · 2025 to 2025
$507k
A Joint Computational/Experimental Biomedical Summer Research Program for UndergrR25DA032519 · NIDA · DUQUESNE UNIVERSITY · PI EVANSECK, JEFFREY D, MADURA, JEFFRY D. · 2011 to 2015
$418k
NCRR NIH HHS U54 RR022241NCRR NIH HHS U54RR022241NIAID NIH HHS R15 AI191143NIDA NIH HHS R25 DA032519NIDA NIH HHS R25DA032519NIGMS NIH HHS U54 GM103529
6 · The paper itself

Abstract

We present herein characteristics of a conjugate in which dL5, a fluorogen activating protein (FAP), and AEAEAKAK, an amphiphilic peptide, are combined to form a solid-phase fluorescence detection platform. The FAP dL5 is a covalently linked dimer of two identical light chain variable fragments which activates the fluorescence of the fluorogen malachite green (MG). The amphiphilic peptide of sequence AEAEAKAK is a building block of stimuli-responsive materials that undergoes sol-gel phase transition at high ionic strengths. We hypothesize that the novel bifunctional protein containing both the FAP and the amphiphile, termed dL5_EAK coassembles with the self-assembling peptide [AEAEAKAK]2 (EAK16-II) to form an insoluble membrane composite whereby the fluorescence enhancement function of the FAP domain remains intact. Denaturing polyacrylamide electrophoresis indicated that greater than 78% of dL5_EAK incorporates into the EAK16-II membrane. Conversely, less than 32% of dL5 without the EAK sequence associates with the insoluble fraction of EAK16-II in buffers. Membranes containing dL5_EAK and EAK16-II exhibited at least 4-fold higher fluorescence intensity compared to mixtures containing dL5 and EAK16-II. Scanning electron microscopy revealed the presence of particulates, presumably FAPs, scattered on the membrane fibrils. The evidence suggests a system of materials that can be developed into in situ forming local sensors by immobilizing dL5 into coacervate, on which MG can be detected. It is envisioned that dL5 membranes can be established in diseased locales to monitor infiltration and migration of inflammatory cells marked with antibodies conjugated to MG.

Indexed as

Protein EngineeringAmino Acid SequenceFluorescenceFluorescent DyesImmunoglobulin Light ChainsMolecular Sequence DataOligopeptidesRecombinant Fusion ProteinsRosaniline DyesSingle-Chain AntibodiesSpectrometry, FluorescenceEAK16 peptideFluorescent DyesImmunoglobulin Light Chainsmalachite greenOligopeptidesRecombinant Fusion ProteinsRosaniline DyesSingle-Chain Antibodies

Identifiers

PMID23573960
PMCPMC3680115
OpenAlexW2073512660

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.