Evidence map›Paper›PMID 23569277›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Evolution of modular intraflagellar transport from a coatomer-like progenitor.

Teunis J P van Dam, Matthew J Townsend, Martin Turk, Avner Schlessinger, Andrej Sali, Mark C Field, Martijn A Huynen

Open access · greenAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 98 papers.

0numbers the graph read from it
0cells of the map it votes in
98citing papers in PubMed
10.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

98 citing papers in PubMed, 163 citations in OpenAlex.

  1. Review
  2. Article
  3. Nuclear genome sequencing reveals the highly intron-rich architecture of the chlorarachniophyte alga Amorphochlora amoebiformis.DNA research : an international journal for rapid publication of reports on genes and genomes · 2025
    Article
  4. Virulence · 2025
    Article
  5. Article
  6. Article
  7. The intraflagellar transport cycle.Nature reviews. Molecular cell biology · 2025
    Review
  8. Article
  9. Article
  10. Evolutionary trajectory for nuclear functions of ciliary transport complex proteins.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Architecture of intraflagellar transport complexes.Nature structural & molecular biology · 2023
    Article
  20. Article

38 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 4 countries.

Teunis J P van DamRadboud University Medical Centre, 6500 HB, Nijmegen, The Netherlands.
Matthew J Townsend
Martin Turk
Avner Schlessinger
Andrej Sali
Mark C Field
Martijn A Huynen
Bioengineering Center · RUUniversity of Cambridge · GBRadboud University Medical Center · NLRadboud University Nijmegen · NLUniversity of California, San Francisco · US

Funding

NEW TOOLS FOR EXPLORING THE DYNAMIC INTERACTOME(RMI)U54RR022220 · NCRR · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2005 to 2011
$19.3M
New Tools for Exploring the Dynamic Interactome (Renewal)U54GM103511 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2012 to 2013
$6.2M
NCRR NIH HHS U54 RR022220NIGMS NIH HHS U54 GM103511Wellcome Trust 082813
6 · The paper itself

Abstract

The intraflagellar transport (IFT) complex is an integral component of the cilium, a quintessential organelle of the eukaryotic cell. The IFT system consists of three subcomplexes [i.e., intraflagellar transport (IFT)-A, IFT-B, and the BBSome], which together transport proteins and other molecules along the cilium. IFT dysfunction results in diseases collectively called ciliopathies. It has been proposed that the IFT complexes originated from vesicle coats similar to coat protein complex (COP) I, COPII, and clathrin. Here we provide phylogenetic evidence for common ancestry of IFT subunits and α, β', and ε subunits of COPI, and trace the origins of the IFT-A, IFT-B, and the BBSome subcomplexes. We find that IFT-A and the BBSome likely arose from an IFT-B-like complex by intracomplex subunit duplication. The distribution of IFT proteins across eukaryotes identifies the BBSome as a frequently lost, modular component of the IFT. Significantly, loss of the BBSome from a taxon is a frequent precursor to complete cilium loss in related taxa. Given the inferred late origin of the BBSome in cilium evolution and its frequent loss, the IFT complex behaves as a "last-in, first-out" system. The protocoatomer origin of the IFT complex corroborates involvement of IFT components in vesicle transport. Expansion of IFT subunits by duplication and their subsequent independent loss supports the idea of modularity and structural independence of the IFT subcomplexes.

Indexed as

Evolution, MolecularModels, MolecularPhylogenyAmino Acid SequenceBase SequenceBiological TransportCarrier ProteinsCiliaCluster AnalysisCoat Protein Complex IFlagellaHumansMolecular Sequence DataMultiprotein ComplexesProtein FoldingProtein SubunitsCarrier ProteinsCoat Protein Complex IMultiprotein ComplexesProtein Subunits

Identifiers

PMID23569277
PMCPMC3637775
OpenAlexW2082188981

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.